Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0605

Experiment: marine_broth_2216 with Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0603 and B158DRAFT_0604 are separated by 58 nucleotidesB158DRAFT_0604 and B158DRAFT_0605 are separated by 51 nucleotidesB158DRAFT_0605 and B158DRAFT_0606 are separated by 82 nucleotidesB158DRAFT_0606 and B158DRAFT_0607 are separated by 56 nucleotides B158DRAFT_0603: B158DRAFT_0603 - heat-inducible transcription repressor HrcA, at 607,926 to 608,954 _0603 B158DRAFT_0604: B158DRAFT_0604 - Molecular chaperone GrpE (heat shock protein), at 609,013 to 609,648 _0604 B158DRAFT_0605: B158DRAFT_0605 - Uncharacterized protein conserved in bacteria, at 609,700 to 610,347 _0605 B158DRAFT_0606: B158DRAFT_0606 - Uncharacterized conserved protein, at 610,430 to 611,146 _0606 B158DRAFT_0607: B158DRAFT_0607 - Beta-lactamase class C and other penicillin binding proteins, at 611,203 to 613,095 _0607 Position (kb) 609 610 611Strain fitness (log2 ratio) -3 -2 -1 0 1at 608.760 kb on - strand, within B158DRAFT_0603at 608.842 kb on + strand, within B158DRAFT_0603at 608.844 kb on + strand, within B158DRAFT_0603at 608.852 kb on + strandat 608.860 kb on - strandat 608.862 kb on + strandat 608.869 kb on - strandat 608.888 kb on - strandat 608.900 kb on - strandat 608.900 kb on - strandat 608.997 kb on + strandat 608.997 kb on + strandat 608.997 kb on + strandat 608.997 kb on + strandat 609.007 kb on + strandat 609.007 kb on + strandat 609.007 kb on + strandat 609.007 kb on + strandat 609.007 kb on + strandat 609.107 kb on + strand, within B158DRAFT_0604at 609.107 kb on + strand, within B158DRAFT_0604at 609.107 kb on + strand, within B158DRAFT_0604at 609.117 kb on + strand, within B158DRAFT_0604at 609.117 kb on + strand, within B158DRAFT_0604at 609.117 kb on + strand, within B158DRAFT_0604at 609.653 kb on - strandat 609.668 kb on + strandat 609.675 kb on - strandat 609.725 kb on + strandat 609.757 kb on + strandat 609.824 kb on + strand, within B158DRAFT_0605at 609.832 kb on - strand, within B158DRAFT_0605at 609.843 kb on - strand, within B158DRAFT_0605at 609.910 kb on - strand, within B158DRAFT_0605at 609.924 kb on - strand, within B158DRAFT_0605at 609.929 kb on - strand, within B158DRAFT_0605at 609.934 kb on - strand, within B158DRAFT_0605at 609.934 kb on - strand, within B158DRAFT_0605at 609.934 kb on - strand, within B158DRAFT_0605at 609.951 kb on + strand, within B158DRAFT_0605at 609.976 kb on + strand, within B158DRAFT_0605at 610.130 kb on - strand, within B158DRAFT_0605at 610.181 kb on + strand, within B158DRAFT_0605at 610.189 kb on - strand, within B158DRAFT_0605at 610.189 kb on - strand, within B158DRAFT_0605at 610.223 kb on - strand, within B158DRAFT_0605at 610.299 kb on - strandat 610.349 kb on - strandat 610.356 kb on + strandat 610.356 kb on + strandat 610.356 kb on + strandat 610.366 kb on + strandat 610.368 kb on + strandat 610.376 kb on + strandat 610.376 kb on - strandat 610.384 kb on - strandat 610.398 kb on + strandat 610.442 kb on + strandat 610.442 kb on + strandat 610.442 kb on + strandat 610.500 kb on - strandat 610.517 kb on + strand, within B158DRAFT_0606at 610.527 kb on + strand, within B158DRAFT_0606at 610.537 kb on + strand, within B158DRAFT_0606at 610.537 kb on + strand, within B158DRAFT_0606at 610.545 kb on - strand, within B158DRAFT_0606at 610.545 kb on - strand, within B158DRAFT_0606at 610.565 kb on + strand, within B158DRAFT_0606at 610.568 kb on - strand, within B158DRAFT_0606at 610.573 kb on - strand, within B158DRAFT_0606at 610.575 kb on + strand, within B158DRAFT_0606at 610.583 kb on - strand, within B158DRAFT_0606at 610.619 kb on + strand, within B158DRAFT_0606at 610.627 kb on - strand, within B158DRAFT_0606at 610.636 kb on - strand, within B158DRAFT_0606at 610.640 kb on + strand, within B158DRAFT_0606at 610.640 kb on + strand, within B158DRAFT_0606at 610.648 kb on - strand, within B158DRAFT_0606at 610.663 kb on - strand, within B158DRAFT_0606at 610.663 kb on - strand, within B158DRAFT_0606at 610.694 kb on - strand, within B158DRAFT_0606at 610.748 kb on - strand, within B158DRAFT_0606at 610.796 kb on + strand, within B158DRAFT_0606at 610.804 kb on - strand, within B158DRAFT_0606at 610.901 kb on - strand, within B158DRAFT_0606at 610.901 kb on - strand, within B158DRAFT_0606at 611.114 kb on + strandat 611.122 kb on - strandat 611.161 kb on + strandat 611.169 kb on - strandat 611.169 kb on - strandat 611.169 kb on - strandat 611.169 kb on - strandat 611.172 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 with Chloride 500 mM
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608,760 - B158DRAFT_0603 0.81 -1.0
608,842 + B158DRAFT_0603 0.89 +0.4
608,844 + B158DRAFT_0603 0.89 +0.4
608,852 + -0.4
608,860 - +0.0
608,862 + +0.1
608,869 - +0.0
608,888 - -0.3
608,900 - +0.5
608,900 - -0.3
608,997 + -0.1
608,997 + -0.1
608,997 + -0.3
608,997 + +0.1
609,007 + -0.3
609,007 + -0.3
609,007 + -0.1
609,007 + +0.1
609,007 + -0.1
609,107 + B158DRAFT_0604 0.15 +0.2
609,107 + B158DRAFT_0604 0.15 -0.7
609,107 + B158DRAFT_0604 0.15 -0.5
609,117 + B158DRAFT_0604 0.16 +0.7
609,117 + B158DRAFT_0604 0.16 -3.6
609,117 + B158DRAFT_0604 0.16 -0.5
609,653 - +0.0
609,668 + +0.1
609,675 - -1.4
609,725 + -0.9
609,757 + -0.2
609,824 + B158DRAFT_0605 0.19 -0.5
609,832 - B158DRAFT_0605 0.20 -0.3
609,843 - B158DRAFT_0605 0.22 -0.1
609,910 - B158DRAFT_0605 0.32 -0.3
609,924 - B158DRAFT_0605 0.35 -0.4
609,929 - B158DRAFT_0605 0.35 -0.6
609,934 - B158DRAFT_0605 0.36 -1.3
609,934 - B158DRAFT_0605 0.36 -0.2
609,934 - B158DRAFT_0605 0.36 +0.5
609,951 + B158DRAFT_0605 0.39 -0.9
609,976 + B158DRAFT_0605 0.43 +0.0
610,130 - B158DRAFT_0605 0.66 -0.2
610,181 + B158DRAFT_0605 0.74 -1.3
610,189 - B158DRAFT_0605 0.75 -1.1
610,189 - B158DRAFT_0605 0.75 +0.1
610,223 - B158DRAFT_0605 0.81 -1.3
610,299 - -0.3
610,349 - -0.1
610,356 + -0.9
610,356 + -0.6
610,356 + +0.1
610,366 + -3.1
610,368 + -0.8
610,376 + -0.4
610,376 - +0.1
610,384 - -1.3
610,398 + +0.0
610,442 + +0.1
610,442 + -1.4
610,442 + -0.3
610,500 - -0.2
610,517 + B158DRAFT_0606 0.12 +0.3
610,527 + B158DRAFT_0606 0.14 +0.3
610,537 + B158DRAFT_0606 0.15 -0.2
610,537 + B158DRAFT_0606 0.15 -0.2
610,545 - B158DRAFT_0606 0.16 -1.1
610,545 - B158DRAFT_0606 0.16 -0.9
610,565 + B158DRAFT_0606 0.19 -1.0
610,568 - B158DRAFT_0606 0.19 +0.0
610,573 - B158DRAFT_0606 0.20 +0.1
610,575 + B158DRAFT_0606 0.20 +0.6
610,583 - B158DRAFT_0606 0.21 +0.3
610,619 + B158DRAFT_0606 0.26 -0.9
610,627 - B158DRAFT_0606 0.27 -0.9
610,636 - B158DRAFT_0606 0.29 -0.4
610,640 + B158DRAFT_0606 0.29 -0.2
610,640 + B158DRAFT_0606 0.29 -1.0
610,648 - B158DRAFT_0606 0.30 -1.0
610,663 - B158DRAFT_0606 0.32 -0.2
610,663 - B158DRAFT_0606 0.32 -2.1
610,694 - B158DRAFT_0606 0.37 -1.3
610,748 - B158DRAFT_0606 0.44 +0.3
610,796 + B158DRAFT_0606 0.51 -0.6
610,804 - B158DRAFT_0606 0.52 -0.9
610,901 - B158DRAFT_0606 0.66 +0.7
610,901 - B158DRAFT_0606 0.66 -0.3
611,114 + +0.3
611,122 - +1.0
611,161 + -0.5
611,169 - +0.1
611,169 - -0.4
611,169 - +0.2
611,169 - -1.1
611,172 + +0.1

Or see this region's nucleotide sequence