Strain Fitness in Agrobacterium fabrum C58 around Atu5123

Experiment: R2A with Strontium chloride 750 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5121 and Atu5122 are separated by 38 nucleotidesAtu5122 and Atu5123 overlap by 4 nucleotidesAtu5123 and Atu5124 overlap by 1 nucleotides Atu5121: Atu5121 - two component response regulator, at 127,712 to 128,386 Atu5121 Atu5122: Atu5122 - 3-ketoacyl-ACP reductase, at 128,425 to 129,204 Atu5122 Atu5123: Atu5123 - acetolactate synthase catalytic subunit, at 129,201 to 130,916 Atu5123 Atu5124: Atu5124 - glutamate-1-semialdehyde aminotransferase, at 130,916 to 132,250 Atu5124 Position (kb) 129 130 131Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 128.214 kb on + strand, within Atu5121at 128.217 kb on - strand, within Atu5121at 128.219 kb on + strand, within Atu5121at 128.219 kb on + strand, within Atu5121at 128.219 kb on + strand, within Atu5121at 128.222 kb on - strand, within Atu5121at 128.227 kb on - strand, within Atu5121at 128.227 kb on - strand, within Atu5121at 128.227 kb on - strand, within Atu5121at 128.227 kb on - strand, within Atu5121at 128.227 kb on - strand, within Atu5121at 128.227 kb on - strand, within Atu5121at 128.232 kb on - strand, within Atu5121at 128.273 kb on + strand, within Atu5121at 128.337 kb on - strandat 128.368 kb on - strandat 128.368 kb on - strandat 128.432 kb on + strandat 128.432 kb on + strandat 128.436 kb on - strandat 128.532 kb on + strand, within Atu5122at 128.532 kb on + strand, within Atu5122at 128.540 kb on - strand, within Atu5122at 128.542 kb on + strand, within Atu5122at 128.677 kb on + strand, within Atu5122at 128.682 kb on + strand, within Atu5122at 128.685 kb on - strand, within Atu5122at 128.685 kb on - strand, within Atu5122at 128.685 kb on - strand, within Atu5122at 128.685 kb on - strand, within Atu5122at 128.722 kb on + strand, within Atu5122at 128.736 kb on + strand, within Atu5122at 128.763 kb on + strand, within Atu5122at 128.766 kb on - strand, within Atu5122at 128.810 kb on + strand, within Atu5122at 128.816 kb on - strand, within Atu5122at 128.818 kb on + strand, within Atu5122at 128.885 kb on + strand, within Atu5122at 128.940 kb on + strand, within Atu5122at 128.967 kb on - strand, within Atu5122at 129.038 kb on - strand, within Atu5122at 129.038 kb on - strand, within Atu5122at 129.047 kb on + strand, within Atu5122at 129.070 kb on - strand, within Atu5122at 129.111 kb on + strand, within Atu5122at 129.211 kb on + strandat 129.216 kb on + strandat 129.255 kb on - strandat 129.259 kb on + strandat 129.259 kb on + strandat 129.267 kb on - strandat 129.313 kb on + strandat 129.328 kb on - strandat 129.370 kb on + strandat 129.378 kb on - strand, within Atu5123at 129.414 kb on - strand, within Atu5123at 129.414 kb on - strand, within Atu5123at 129.414 kb on - strand, within Atu5123at 129.450 kb on - strand, within Atu5123at 129.520 kb on + strand, within Atu5123at 129.528 kb on - strand, within Atu5123at 129.528 kb on - strand, within Atu5123at 129.528 kb on - strand, within Atu5123at 129.544 kb on + strand, within Atu5123at 129.544 kb on + strand, within Atu5123at 129.552 kb on - strand, within Atu5123at 129.552 kb on - strand, within Atu5123at 129.552 kb on - strand, within Atu5123at 129.575 kb on - strand, within Atu5123at 129.623 kb on + strand, within Atu5123at 129.623 kb on - strand, within Atu5123at 129.631 kb on - strand, within Atu5123at 129.769 kb on + strand, within Atu5123at 129.785 kb on + strand, within Atu5123at 129.791 kb on - strand, within Atu5123at 129.795 kb on + strand, within Atu5123at 129.795 kb on + strand, within Atu5123at 129.795 kb on + strand, within Atu5123at 129.803 kb on - strand, within Atu5123at 129.854 kb on - strand, within Atu5123at 129.893 kb on + strand, within Atu5123at 129.893 kb on + strand, within Atu5123at 129.993 kb on - strand, within Atu5123at 130.020 kb on - strand, within Atu5123at 130.020 kb on - strand, within Atu5123at 130.044 kb on - strand, within Atu5123at 130.126 kb on - strand, within Atu5123at 130.174 kb on + strand, within Atu5123at 130.182 kb on - strand, within Atu5123at 130.215 kb on - strand, within Atu5123at 130.247 kb on - strand, within Atu5123at 130.249 kb on - strand, within Atu5123at 130.351 kb on - strand, within Atu5123at 130.405 kb on - strand, within Atu5123at 130.545 kb on - strand, within Atu5123at 130.598 kb on - strand, within Atu5123at 130.634 kb on + strand, within Atu5123at 130.647 kb on - strand, within Atu5123at 130.656 kb on - strand, within Atu5123at 130.687 kb on - strand, within Atu5123at 130.689 kb on + strand, within Atu5123at 130.697 kb on - strand, within Atu5123at 130.697 kb on - strand, within Atu5123at 130.735 kb on + strand, within Atu5123at 130.789 kb on - strandat 130.789 kb on - strandat 130.789 kb on - strandat 130.986 kb on + strandat 131.072 kb on - strand, within Atu5124at 131.210 kb on + strand, within Atu5124at 131.210 kb on + strand, within Atu5124at 131.218 kb on - strand, within Atu5124at 131.218 kb on - strand, within Atu5124at 131.275 kb on - strand, within Atu5124at 131.325 kb on + strand, within Atu5124at 131.325 kb on + strand, within Atu5124at 131.383 kb on + strand, within Atu5124at 131.389 kb on - strand, within Atu5124at 131.429 kb on - strand, within Atu5124at 131.449 kb on - strand, within Atu5124at 131.506 kb on - strand, within Atu5124at 131.506 kb on - strand, within Atu5124at 131.506 kb on - strand, within Atu5124at 131.549 kb on + strand, within Atu5124at 131.567 kb on + strand, within Atu5124at 131.569 kb on + strand, within Atu5124at 131.577 kb on - strand, within Atu5124at 131.579 kb on - strand, within Atu5124at 131.590 kb on + strand, within Atu5124at 131.590 kb on - strand, within Atu5124at 131.777 kb on + strand, within Atu5124at 131.777 kb on + strand, within Atu5124at 131.777 kb on + strand, within Atu5124at 131.777 kb on + strand, within Atu5124at 131.785 kb on - strand, within Atu5124at 131.785 kb on - strand, within Atu5124at 131.785 kb on - strand, within Atu5124at 131.785 kb on - strand, within Atu5124at 131.785 kb on - strand, within Atu5124at 131.799 kb on + strand, within Atu5124at 131.799 kb on + strand, within Atu5124at 131.799 kb on + strand, within Atu5124at 131.799 kb on + strand, within Atu5124at 131.807 kb on - strand, within Atu5124at 131.807 kb on - strand, within Atu5124at 131.807 kb on - strand, within Atu5124at 131.807 kb on - strand, within Atu5124at 131.881 kb on + strand, within Atu5124at 131.894 kb on + strand, within Atu5124

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Strontium chloride 750 mM
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128,214 + Atu5121 0.74 -1.3
128,217 - Atu5121 0.75 -0.7
128,219 + Atu5121 0.75 -1.2
128,219 + Atu5121 0.75 -0.7
128,219 + Atu5121 0.75 +0.4
128,222 - Atu5121 0.76 -0.5
128,227 - Atu5121 0.76 -1.0
128,227 - Atu5121 0.76 +0.2
128,227 - Atu5121 0.76 -0.3
128,227 - Atu5121 0.76 -1.0
128,227 - Atu5121 0.76 -1.3
128,227 - Atu5121 0.76 +0.1
128,232 - Atu5121 0.77 -0.4
128,273 + Atu5121 0.83 +0.5
128,337 - -0.3
128,368 - +0.7
128,368 - -0.0
128,432 + +0.1
128,432 + -1.0
128,436 - +0.3
128,532 + Atu5122 0.14 +0.1
128,532 + Atu5122 0.14 -1.6
128,540 - Atu5122 0.15 +0.5
128,542 + Atu5122 0.15 -0.4
128,677 + Atu5122 0.32 -1.3
128,682 + Atu5122 0.33 +0.5
128,685 - Atu5122 0.33 -1.5
128,685 - Atu5122 0.33 -0.2
128,685 - Atu5122 0.33 +0.6
128,685 - Atu5122 0.33 +0.6
128,722 + Atu5122 0.38 +0.1
128,736 + Atu5122 0.40 +0.7
128,763 + Atu5122 0.43 -0.4
128,766 - Atu5122 0.44 +1.0
128,810 + Atu5122 0.49 +0.8
128,816 - Atu5122 0.50 -0.2
128,818 + Atu5122 0.50 +0.2
128,885 + Atu5122 0.59 +0.7
128,940 + Atu5122 0.66 +0.2
128,967 - Atu5122 0.69 -0.9
129,038 - Atu5122 0.79 -1.4
129,038 - Atu5122 0.79 -0.0
129,047 + Atu5122 0.80 +2.2
129,070 - Atu5122 0.83 +0.5
129,111 + Atu5122 0.88 -0.5
129,211 + +0.7
129,216 + +0.8
129,255 - +0.9
129,259 + -0.1
129,259 + -1.8
129,267 - +0.8
129,313 + -1.2
129,328 - -0.4
129,370 + -0.8
129,378 - Atu5123 0.10 -0.1
129,414 - Atu5123 0.12 +0.5
129,414 - Atu5123 0.12 -0.2
129,414 - Atu5123 0.12 -1.1
129,450 - Atu5123 0.15 -0.3
129,520 + Atu5123 0.19 -0.4
129,528 - Atu5123 0.19 -0.4
129,528 - Atu5123 0.19 -0.7
129,528 - Atu5123 0.19 +0.8
129,544 + Atu5123 0.20 +1.0
129,544 + Atu5123 0.20 +1.8
129,552 - Atu5123 0.20 -0.6
129,552 - Atu5123 0.20 -0.1
129,552 - Atu5123 0.20 -0.6
129,575 - Atu5123 0.22 -0.0
129,623 + Atu5123 0.25 -0.5
129,623 - Atu5123 0.25 +0.8
129,631 - Atu5123 0.25 -0.5
129,769 + Atu5123 0.33 +0.2
129,785 + Atu5123 0.34 -0.3
129,791 - Atu5123 0.34 -0.3
129,795 + Atu5123 0.35 -0.6
129,795 + Atu5123 0.35 -0.1
129,795 + Atu5123 0.35 -0.5
129,803 - Atu5123 0.35 +0.2
129,854 - Atu5123 0.38 +0.4
129,893 + Atu5123 0.40 -0.3
129,893 + Atu5123 0.40 -0.1
129,993 - Atu5123 0.46 +0.4
130,020 - Atu5123 0.48 +0.0
130,020 - Atu5123 0.48 -0.3
130,044 - Atu5123 0.49 +0.2
130,126 - Atu5123 0.54 -0.5
130,174 + Atu5123 0.57 -0.1
130,182 - Atu5123 0.57 -1.0
130,215 - Atu5123 0.59 -1.0
130,247 - Atu5123 0.61 -0.7
130,249 - Atu5123 0.61 -0.3
130,351 - Atu5123 0.67 +0.2
130,405 - Atu5123 0.70 -0.6
130,545 - Atu5123 0.78 -0.0
130,598 - Atu5123 0.81 +0.1
130,634 + Atu5123 0.84 -0.8
130,647 - Atu5123 0.84 -0.0
130,656 - Atu5123 0.85 +0.3
130,687 - Atu5123 0.87 -0.5
130,689 + Atu5123 0.87 +0.3
130,697 - Atu5123 0.87 -0.7
130,697 - Atu5123 0.87 +1.8
130,735 + Atu5123 0.89 -0.7
130,789 - -0.0
130,789 - -0.9
130,789 - +0.2
130,986 + +0.1
131,072 - Atu5124 0.12 -1.3
131,210 + Atu5124 0.22 -0.1
131,210 + Atu5124 0.22 +0.5
131,218 - Atu5124 0.23 -0.9
131,218 - Atu5124 0.23 +0.5
131,275 - Atu5124 0.27 -0.5
131,325 + Atu5124 0.31 -2.0
131,325 + Atu5124 0.31 -0.2
131,383 + Atu5124 0.35 -1.0
131,389 - Atu5124 0.35 -2.0
131,429 - Atu5124 0.38 -0.6
131,449 - Atu5124 0.40 -0.6
131,506 - Atu5124 0.44 -0.4
131,506 - Atu5124 0.44 +2.3
131,506 - Atu5124 0.44 -0.8
131,549 + Atu5124 0.47 +0.0
131,567 + Atu5124 0.49 +0.3
131,569 + Atu5124 0.49 +0.1
131,577 - Atu5124 0.50 -0.9
131,579 - Atu5124 0.50 -1.1
131,590 + Atu5124 0.50 +0.6
131,590 - Atu5124 0.50 -0.1
131,777 + Atu5124 0.64 -0.6
131,777 + Atu5124 0.64 -0.0
131,777 + Atu5124 0.64 +0.2
131,777 + Atu5124 0.64 -0.4
131,785 - Atu5124 0.65 -0.5
131,785 - Atu5124 0.65 -0.9
131,785 - Atu5124 0.65 -0.4
131,785 - Atu5124 0.65 -3.0
131,785 - Atu5124 0.65 -2.7
131,799 + Atu5124 0.66 -0.8
131,799 + Atu5124 0.66 -0.5
131,799 + Atu5124 0.66 -0.5
131,799 + Atu5124 0.66 -0.8
131,807 - Atu5124 0.67 -0.8
131,807 - Atu5124 0.67 -0.8
131,807 - Atu5124 0.67 +0.8
131,807 - Atu5124 0.67 -2.1
131,881 + Atu5124 0.72 -1.2
131,894 + Atu5124 0.73 -1.1

Or see this region's nucleotide sequence