Strain Fitness in Agrobacterium fabrum C58 around Atu2695

Experiment: R2A with Strontium chloride 750 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu2694 and Atu2695 overlap by 4 nucleotidesAtu2695 and Atu2696 are separated by 122 nucleotides Atu2694: Atu2694 - hypothetical protein, at 2,678,342 to 2,679,616 Atu2694 Atu2695: Atu2695 - diaminopimelate epimerase, at 2,679,613 to 2,680,512 Atu2695 Atu2696: Atu2696 - hypothetical protein, at 2,680,635 to 2,681,705 Atu2696 Position (kb) 2679 2680 2681Strain fitness (log2 ratio) -1 0 1at 2679.032 kb on - strand, within Atu2694at 2680.531 kb on - strandat 2680.684 kb on - strandat 2680.699 kb on - strandat 2680.717 kb on + strandat 2680.719 kb on + strandat 2680.720 kb on - strandat 2680.761 kb on - strand, within Atu2696at 2680.796 kb on - strand, within Atu2696at 2680.808 kb on + strand, within Atu2696at 2680.808 kb on + strand, within Atu2696at 2680.808 kb on + strand, within Atu2696at 2680.809 kb on - strand, within Atu2696at 2680.810 kb on + strand, within Atu2696at 2680.816 kb on - strand, within Atu2696at 2680.853 kb on + strand, within Atu2696at 2680.853 kb on + strand, within Atu2696at 2680.853 kb on + strand, within Atu2696at 2680.853 kb on + strand, within Atu2696at 2680.861 kb on - strand, within Atu2696at 2680.861 kb on - strand, within Atu2696at 2680.861 kb on - strand, within Atu2696at 2680.861 kb on - strand, within Atu2696at 2680.876 kb on - strand, within Atu2696at 2680.897 kb on + strand, within Atu2696at 2680.902 kb on + strand, within Atu2696at 2680.906 kb on + strand, within Atu2696at 2681.017 kb on + strand, within Atu2696at 2681.025 kb on - strand, within Atu2696at 2681.030 kb on + strand, within Atu2696at 2681.052 kb on + strand, within Atu2696at 2681.057 kb on - strand, within Atu2696at 2681.106 kb on - strand, within Atu2696at 2681.109 kb on + strand, within Atu2696at 2681.171 kb on - strand, within Atu2696at 2681.240 kb on + strand, within Atu2696at 2681.240 kb on - strand, within Atu2696at 2681.247 kb on - strand, within Atu2696at 2681.253 kb on - strand, within Atu2696at 2681.299 kb on + strand, within Atu2696at 2681.342 kb on + strand, within Atu2696at 2681.355 kb on - strand, within Atu2696at 2681.378 kb on - strand, within Atu2696at 2681.400 kb on + strand, within Atu2696at 2681.482 kb on + strand, within Atu2696at 2681.490 kb on - strand, within Atu2696

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Strontium chloride 750 mM
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2,679,032 - Atu2694 0.54 -1.1
2,680,531 - -0.5
2,680,684 - +0.0
2,680,699 - -0.6
2,680,717 + -0.0
2,680,719 + +0.7
2,680,720 - +0.3
2,680,761 - Atu2696 0.12 +0.1
2,680,796 - Atu2696 0.15 -0.3
2,680,808 + Atu2696 0.16 -0.3
2,680,808 + Atu2696 0.16 +0.2
2,680,808 + Atu2696 0.16 -0.3
2,680,809 - Atu2696 0.16 -0.6
2,680,810 + Atu2696 0.16 -0.6
2,680,816 - Atu2696 0.17 -0.5
2,680,853 + Atu2696 0.20 -0.3
2,680,853 + Atu2696 0.20 -0.6
2,680,853 + Atu2696 0.20 -0.1
2,680,853 + Atu2696 0.20 -0.2
2,680,861 - Atu2696 0.21 +0.6
2,680,861 - Atu2696 0.21 -0.5
2,680,861 - Atu2696 0.21 -0.4
2,680,861 - Atu2696 0.21 +0.6
2,680,876 - Atu2696 0.23 +0.2
2,680,897 + Atu2696 0.24 +1.1
2,680,902 + Atu2696 0.25 -0.5
2,680,906 + Atu2696 0.25 +0.3
2,681,017 + Atu2696 0.36 -0.2
2,681,025 - Atu2696 0.36 -0.3
2,681,030 + Atu2696 0.37 -0.4
2,681,052 + Atu2696 0.39 +0.5
2,681,057 - Atu2696 0.39 +0.1
2,681,106 - Atu2696 0.44 +0.1
2,681,109 + Atu2696 0.44 -0.1
2,681,171 - Atu2696 0.50 +0.5
2,681,240 + Atu2696 0.56 +0.3
2,681,240 - Atu2696 0.56 -0.1
2,681,247 - Atu2696 0.57 +0.2
2,681,253 - Atu2696 0.58 -0.7
2,681,299 + Atu2696 0.62 -0.1
2,681,342 + Atu2696 0.66 -0.0
2,681,355 - Atu2696 0.67 +1.1
2,681,378 - Atu2696 0.69 +0.7
2,681,400 + Atu2696 0.71 +0.3
2,681,482 + Atu2696 0.79 +0.3
2,681,490 - Atu2696 0.80 +0.2

Or see this region's nucleotide sequence