Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt b1146 and ymfL are separated by 43 nucleotides ymfL and ymfM overlap by 4 nucleotides ymfM and oweE are separated by 9 nucleotides oweE and aaaE are separated by 0 nucleotides
b1146: b1146 - orf, hypothetical protein (VIMSS), at 1,202,247 to 1,202,447
b1146
b1147: ymfL - e14 prophage; predicted DNA-binding transcriptional regulator (RefSeq), at 1,202,491 to 1,203,048
ymfL
b1148: ymfM - e14 prophage; predicted protein (NCBI), at 1,203,045 to 1,203,383
ymfM
b4692: oweE - no description, at 1,203,393 to 1,203,626
oweE
b4693: aaaE - no description, at 1,203,627 to 1,204,760
aaaE
Position (kb)
1203
1204 Strain fitness (log2 ratio)
-1
0
1
2 at 1202.825 kb on - strand, within ymfL at 1202.869 kb on - strand, within ymfL at 1202.869 kb on - strand, within ymfL at 1202.897 kb on - strand, within ymfL at 1202.897 kb on - strand, within ymfL at 1202.909 kb on - strand, within ymfL at 1203.060 kb on + strand at 1203.060 kb on + strand at 1203.173 kb on - strand, within ymfM at 1203.180 kb on - strand, within ymfM at 1203.189 kb on - strand, within ymfM at 1203.189 kb on - strand, within ymfM at 1203.378 kb on + strand at 1203.378 kb on + strand at 1203.435 kb on + strand, within oweE at 1203.490 kb on + strand, within oweE at 1203.556 kb on + strand, within oweE at 1203.617 kb on + strand at 1203.617 kb on + strand at 1203.646 kb on - strand at 1203.684 kb on - strand at 1203.684 kb on - strand at 1203.872 kb on + strand, within aaaE at 1203.872 kb on + strand, within aaaE at 1203.872 kb on + strand, within aaaE at 1203.872 kb on + strand, within aaaE at 1203.880 kb on - strand, within aaaE at 1203.891 kb on + strand, within aaaE at 1204.010 kb on + strand, within aaaE at 1204.018 kb on - strand, within aaaE at 1204.078 kb on - strand, within aaaE at 1204.084 kb on + strand, within aaaE at 1204.196 kb on + strand, within aaaE at 1204.204 kb on - strand, within aaaE at 1204.237 kb on - strand, within aaaE at 1204.391 kb on - strand, within aaaE at 1204.420 kb on - strand, within aaaE at 1204.462 kb on + strand, within aaaE
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,202,825 - ymfL b1147 0.60 +0.3 1,202,869 - ymfL b1147 0.68 +1.4 1,202,869 - ymfL b1147 0.68 -0.1 1,202,897 - ymfL b1147 0.73 +1.7 1,202,897 - ymfL b1147 0.73 -1.5 1,202,909 - ymfL b1147 0.75 +0.2 1,203,060 + +0.8 1,203,060 + +0.8 1,203,173 - ymfM b1148 0.38 +0.4 1,203,180 - ymfM b1148 0.40 +1.8 1,203,189 - ymfM b1148 0.42 -0.3 1,203,189 - ymfM b1148 0.42 +0.3 1,203,378 + -0.3 1,203,378 + +0.4 1,203,435 + oweE b4692 0.18 +0.6 1,203,490 + oweE b4692 0.41 -0.8 1,203,556 + oweE b4692 0.70 +0.7 1,203,617 + -1.0 1,203,617 + -1.2 1,203,646 - -0.1 1,203,684 - +0.2 1,203,684 - +0.8 1,203,872 + aaaE b4693 0.22 +0.1 1,203,872 + aaaE b4693 0.22 -0.4 1,203,872 + aaaE b4693 0.22 -0.7 1,203,872 + aaaE b4693 0.22 -1.2 1,203,880 - aaaE b4693 0.22 +0.4 1,203,891 + aaaE b4693 0.23 -0.2 1,204,010 + aaaE b4693 0.34 +0.5 1,204,018 - aaaE b4693 0.34 +0.0 1,204,078 - aaaE b4693 0.40 +0.1 1,204,084 + aaaE b4693 0.40 -0.7 1,204,196 + aaaE b4693 0.50 +0.3 1,204,204 - aaaE b4693 0.51 +0.4 1,204,237 - aaaE b4693 0.54 -0.1 1,204,391 - aaaE b4693 0.67 -0.2 1,204,420 - aaaE b4693 0.70 +0.0 1,204,462 + aaaE b4693 0.74 -0.2
Or see this region's nucleotide sequence