Strain Fitness in Escherichia coli BW25113 around b2740
Experiment: LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB |
---|---|---|---|---|---|
remove | |||||
2,862,384 | - | ygbM | b2739 | 0.16 | +0.1 |
2,862,439 | - | ygbM | b2739 | 0.23 | -0.0 |
2,862,439 | - | ygbM | b2739 | 0.23 | +0.0 |
2,862,479 | - | ygbM | b2739 | 0.28 | +0.3 |
2,862,511 | - | ygbM | b2739 | 0.33 | -0.5 |
2,862,531 | + | ygbM | b2739 | 0.35 | -0.1 |
2,862,569 | - | ygbM | b2739 | 0.40 | +0.3 |
2,862,569 | - | ygbM | b2739 | 0.40 | -0.7 |
2,862,598 | + | ygbM | b2739 | 0.44 | -0.5 |
2,862,608 | + | ygbM | b2739 | 0.45 | -0.3 |
2,862,660 | - | ygbM | b2739 | 0.52 | -0.8 |
2,862,695 | - | ygbM | b2739 | 0.56 | -0.5 |
2,862,708 | - | ygbM | b2739 | 0.58 | +0.1 |
2,862,741 | - | ygbM | b2739 | 0.62 | +0.6 |
2,862,743 | + | ygbM | b2739 | 0.62 | -0.5 |
2,862,743 | + | ygbM | b2739 | 0.62 | +1.5 |
2,862,753 | - | ygbM | b2739 | 0.64 | -1.2 |
2,862,756 | - | ygbM | b2739 | 0.64 | +0.1 |
2,862,767 | + | ygbM | b2739 | 0.66 | -0.4 |
2,862,775 | - | ygbM | b2739 | 0.67 | -1.3 |
2,862,775 | - | ygbM | b2739 | 0.67 | -0.1 |
2,862,898 | - | ygbM | b2739 | 0.82 | +1.1 |
2,862,903 | - | ygbM | b2739 | 0.83 | +0.5 |
2,862,903 | - | ygbM | b2739 | 0.83 | -0.1 |
2,862,936 | - | ygbM | b2739 | 0.87 | -1.2 |
2,862,947 | + | ygbM | b2739 | 0.89 | +0.2 |
2,862,947 | + | ygbM | b2739 | 0.89 | -0.3 |
2,862,967 | - | -0.9 | |||
2,862,997 | + | -0.3 | |||
2,863,069 | - | +0.3 | |||
2,863,084 | - | +0.1 | |||
2,863,114 | + | +0.3 | |||
2,863,140 | + | -0.4 | |||
2,863,261 | - | ygbN | b2740 | 0.10 | -0.3 |
2,863,261 | - | ygbN | b2740 | 0.10 | +0.4 |
2,863,338 | - | ygbN | b2740 | 0.16 | -2.2 |
2,863,342 | + | ygbN | b2740 | 0.16 | -0.0 |
2,863,342 | + | ygbN | b2740 | 0.16 | -0.2 |
2,863,342 | + | ygbN | b2740 | 0.16 | -0.7 |
2,863,370 | + | ygbN | b2740 | 0.18 | +0.3 |
2,863,370 | + | ygbN | b2740 | 0.18 | -0.3 |
2,863,435 | - | ygbN | b2740 | 0.23 | +0.6 |
2,863,571 | - | ygbN | b2740 | 0.33 | -0.8 |
2,863,582 | + | ygbN | b2740 | 0.34 | +0.7 |
2,863,627 | + | ygbN | b2740 | 0.37 | -0.6 |
2,863,627 | + | ygbN | b2740 | 0.37 | -0.2 |
2,863,627 | + | ygbN | b2740 | 0.37 | -1.3 |
2,863,627 | + | ygbN | b2740 | 0.37 | +0.7 |
2,863,693 | - | ygbN | b2740 | 0.42 | +0.2 |
2,863,751 | + | ygbN | b2740 | 0.46 | -0.4 |
2,863,782 | - | ygbN | b2740 | 0.48 | -0.1 |
2,863,832 | + | ygbN | b2740 | 0.52 | -0.2 |
2,863,861 | - | ygbN | b2740 | 0.54 | -0.5 |
2,863,861 | - | ygbN | b2740 | 0.54 | +0.4 |
2,863,933 | + | ygbN | b2740 | 0.59 | +0.1 |
2,863,961 | - | ygbN | b2740 | 0.61 | +0.1 |
2,863,961 | - | ygbN | b2740 | 0.61 | +0.5 |
2,864,020 | + | ygbN | b2740 | 0.66 | -1.1 |
2,864,020 | + | ygbN | b2740 | 0.66 | -0.2 |
2,864,026 | - | ygbN | b2740 | 0.66 | -0.5 |
2,864,036 | + | ygbN | b2740 | 0.67 | +0.6 |
2,864,038 | + | ygbN | b2740 | 0.67 | -0.3 |
2,864,038 | + | ygbN | b2740 | 0.67 | -0.2 |
2,864,101 | - | ygbN | b2740 | 0.72 | +0.5 |
2,864,148 | - | ygbN | b2740 | 0.75 | +0.1 |
2,864,150 | + | ygbN | b2740 | 0.75 | +0.7 |
2,864,231 | - | ygbN | b2740 | 0.81 | +1.3 |
2,864,231 | - | ygbN | b2740 | 0.81 | -0.1 |
2,864,395 | + | -0.7 | |||
2,864,422 | + | -0.1 | |||
2,864,463 | - | +0.2 | |||
2,864,590 | + | +0.7 | |||
2,864,608 | - | -0.5 | |||
2,864,608 | - | +0.5 | |||
2,864,641 | + | +0.9 | |||
2,864,656 | - | +0.5 | |||
2,864,698 | + | rpoS | b2741 | 0.12 | +0.2 |
2,864,840 | - | +1.7 | |||
2,864,866 | + | rpoS | b2741 | 0.29 | -0.8 |
2,864,925 | + | rpoS | b2741 | 0.35 | -0.9 |
2,864,925 | + | rpoS | b2741 | 0.35 | -0.5 |
2,865,021 | + | rpoS | b2741 | 0.44 | +0.7 |
2,865,037 | + | rpoS | b2741 | 0.46 | -0.2 |
2,865,044 | + | rpoS | b2741 | 0.47 | -1.0 |
2,865,047 | - | rpoS | b2741 | 0.47 | +0.0 |
2,865,085 | - | rpoS | b2741 | 0.51 | +0.1 |
2,865,116 | - | rpoS | b2741 | 0.54 | +0.8 |
2,865,175 | + | rpoS | b2741 | 0.60 | -0.2 |
2,865,190 | + | rpoS | b2741 | 0.61 | -0.8 |
2,865,195 | + | rpoS | b2741 | 0.62 | +1.6 |
2,865,198 | - | rpoS | b2741 | 0.62 | -1.6 |
2,865,376 | - | rpoS | b2741 | 0.80 | +0.7 |
2,865,389 | + | rpoS | b2741 | 0.81 | +0.2 |
2,865,415 | + | rpoS | b2741 | 0.84 | +0.7 |
2,865,447 | - | rpoS | b2741 | 0.87 | +0.9 |
Or see this region's nucleotide sequence