Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF833

Experiment: LB_plus_SM_buffer with Ffm_phage 18.75 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF832 and GFF833 are separated by 90 nucleotidesGFF833 and GFF834 are separated by 131 nucleotidesGFF834 and GFF835 are separated by 14 nucleotides GFF832 - '3'-to-5' exoribonuclease RNase R' transl_table=11, at 14,413 to 16,851 GFF832 GFF833 - '23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-)' transl_table=11, at 16,942 to 17,673 GFF833 GFF834 - FIG006163: hypothetical protein, at 17,805 to 18,209 GFF834 GFF835 - PspA/IM30 family protein, at 18,224 to 18,922 GFF835 Position (kb) 16 17 18Strain fitness (log2 ratio) -2 -1 0 1 2at 16.099 kb on + strand, within GFF832at 16.099 kb on + strand, within GFF832at 16.162 kb on + strand, within GFF832at 16.163 kb on - strand, within GFF832at 16.453 kb on + strand, within GFF832at 16.609 kb on - strandat 16.665 kb on + strandat 17.303 kb on + strand, within GFF833at 17.303 kb on + strand, within GFF833at 17.304 kb on - strand, within GFF833at 17.304 kb on - strand, within GFF833at 17.481 kb on + strand, within GFF833at 17.545 kb on - strand, within GFF833at 17.968 kb on - strand, within GFF834at 18.084 kb on + strand, within GFF834at 18.196 kb on - strandat 18.256 kb on + strandat 18.306 kb on + strand, within GFF835at 18.306 kb on + strand, within GFF835at 18.307 kb on - strand, within GFF835at 18.311 kb on - strand, within GFF835at 18.326 kb on - strand, within GFF835at 18.469 kb on + strand, within GFF835

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Ffm_phage 18.75 MOI
remove
16,099 + GFF832 0.69 +1.3
16,099 + GFF832 0.69 -0.4
16,162 + GFF832 0.72 -0.1
16,163 - GFF832 0.72 -0.0
16,453 + GFF832 0.84 -0.0
16,609 - -0.2
16,665 + -0.3
17,303 + GFF833 0.49 -0.5
17,303 + GFF833 0.49 +0.1
17,304 - GFF833 0.49 -1.2
17,304 - GFF833 0.49 -1.3
17,481 + GFF833 0.74 -2.0
17,545 - GFF833 0.82 -1.1
17,968 - GFF834 0.40 -0.1
18,084 + GFF834 0.69 +2.0
18,196 - -0.4
18,256 + +0.1
18,306 + GFF835 0.12 +0.8
18,306 + GFF835 0.12 -0.4
18,307 - GFF835 0.12 +0.1
18,311 - GFF835 0.12 -0.0
18,326 - GFF835 0.15 -0.6
18,469 + GFF835 0.35 +0.1

Or see this region's nucleotide sequence