Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4736

Experiment: LB_plus_SM_buffer with Ffm_phage 18.75 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4734 and GFF4735 are separated by 86 nucleotidesGFF4735 and GFF4736 overlap by 44 nucleotidesGFF4736 and GFF4737 overlap by 8 nucleotidesGFF4737 and GFF4738 overlap by 4 nucleotides GFF4734 - Putative effector protein OrgC of SPI-1 type III secretion system, at 43,122 to 43,484 GFF4734 GFF4735 - OrgB protein, associated with InvC ATPase of type III secretion system, at 43,571 to 44,251 GFF4735 GFF4736 - Oxygen-regulated invasion protein OrgA, at 44,208 to 44,786 GFF4736 GFF4737 - Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ), at 44,779 to 45,537 GFF4737 GFF4738 - Type III secretion system protein, at 45,534 to 45,776 GFF4738 Position (kb) 44 45Strain fitness (log2 ratio) -2 -1 0 1at 43.365 kb on - strand, within GFF4734at 43.476 kb on - strandat 43.546 kb on + strandat 43.547 kb on - strandat 43.616 kb on - strandat 43.682 kb on - strand, within GFF4735at 43.754 kb on - strand, within GFF4735at 43.778 kb on - strand, within GFF4735at 43.784 kb on - strand, within GFF4735at 44.014 kb on + strand, within GFF4735at 44.122 kb on + strand, within GFF4735at 44.188 kb on + strandat 44.251 kb on + strandat 44.252 kb on - strandat 44.426 kb on + strand, within GFF4736at 44.440 kb on - strand, within GFF4736at 44.548 kb on + strand, within GFF4736at 44.649 kb on + strand, within GFF4736at 44.728 kb on + strand, within GFF4736at 44.729 kb on - strandat 44.729 kb on - strandat 44.781 kb on - strandat 44.850 kb on - strandat 45.000 kb on - strand, within GFF4737at 45.078 kb on - strand, within GFF4737at 45.079 kb on + strand, within GFF4737at 45.080 kb on - strand, within GFF4737at 45.144 kb on - strand, within GFF4737at 45.147 kb on + strand, within GFF4737at 45.147 kb on + strand, within GFF4737at 45.148 kb on - strand, within GFF4737at 45.223 kb on + strand, within GFF4737at 45.314 kb on + strand, within GFF4737at 45.329 kb on + strand, within GFF4737at 45.370 kb on - strand, within GFF4737at 45.408 kb on + strand, within GFF4737at 45.442 kb on - strand, within GFF4737at 45.518 kb on + strandat 45.520 kb on + strandat 45.521 kb on - strandat 45.544 kb on - strandat 45.611 kb on - strand, within GFF4738at 45.686 kb on + strand, within GFF4738

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Ffm_phage 18.75 MOI
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43,365 - GFF4734 0.67 -0.0
43,476 - +0.5
43,546 + +0.6
43,547 - +0.8
43,616 - -0.1
43,682 - GFF4735 0.16 +0.4
43,754 - GFF4735 0.27 -0.1
43,778 - GFF4735 0.30 +0.0
43,784 - GFF4735 0.31 -0.2
44,014 + GFF4735 0.65 -0.3
44,122 + GFF4735 0.81 -0.8
44,188 + +0.3
44,251 + +0.2
44,252 - -0.8
44,426 + GFF4736 0.38 -0.6
44,440 - GFF4736 0.40 -1.1
44,548 + GFF4736 0.59 -0.5
44,649 + GFF4736 0.76 -0.6
44,728 + GFF4736 0.90 -0.1
44,729 - -0.4
44,729 - -0.3
44,781 - -0.5
44,850 - -0.0
45,000 - GFF4737 0.29 +0.1
45,078 - GFF4737 0.39 -0.0
45,079 + GFF4737 0.40 +0.0
45,080 - GFF4737 0.40 -0.5
45,144 - GFF4737 0.48 +0.2
45,147 + GFF4737 0.48 -0.4
45,147 + GFF4737 0.48 -1.9
45,148 - GFF4737 0.49 +0.7
45,223 + GFF4737 0.58 -0.0
45,314 + GFF4737 0.70 -0.6
45,329 + GFF4737 0.72 -0.3
45,370 - GFF4737 0.78 -0.4
45,408 + GFF4737 0.83 -0.1
45,442 - GFF4737 0.87 +0.4
45,518 + +0.3
45,520 + -0.7
45,521 - +0.2
45,544 - +0.3
45,611 - GFF4738 0.32 -0.5
45,686 + GFF4738 0.63 -1.1

Or see this region's nucleotide sequence