Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4454

Experiment: LB_plus_SM_buffer with Ffm_phage 18.75 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4452 and GFF4453 are separated by 9 nucleotidesGFF4453 and GFF4454 are separated by 45 nucleotidesGFF4454 and GFF4455 are separated by 603 nucleotides GFF4452 - Fimbriae-like adhesin SfmH, at 238,889 to 239,896 GFF4452 GFF4453 - Fimbriae-like periplasmic protein SfmF, at 239,906 to 240,424 GFF4453 GFF4454 - Transcriptional regulator of fimbriae expression FimZ (LuxR/UhpA family), at 240,470 to 241,102 GFF4454 GFF4455 - Transcriptional regulator of fimbriae expression FimY, at 241,706 to 242,428 GFF4455 Position (kb) 240 241 242Strain fitness (log2 ratio) -1 0 1 2at 239.541 kb on + strand, within GFF4452at 239.605 kb on + strand, within GFF4452at 239.614 kb on + strand, within GFF4452at 239.720 kb on - strand, within GFF4452at 239.722 kb on + strand, within GFF4452at 239.806 kb on + strandat 240.167 kb on - strand, within GFF4453at 240.167 kb on - strand, within GFF4453at 240.351 kb on - strand, within GFF4453at 240.353 kb on - strand, within GFF4453at 240.422 kb on + strandat 240.423 kb on - strandat 240.471 kb on + strandat 240.539 kb on + strand, within GFF4454at 241.063 kb on + strandat 241.108 kb on + strandat 241.789 kb on + strand, within GFF4455at 242.021 kb on - strand, within GFF4455at 242.088 kb on - strand, within GFF4455

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Ffm_phage 18.75 MOI
remove
239,541 + GFF4452 0.65 -1.4
239,605 + GFF4452 0.71 +1.9
239,614 + GFF4452 0.72 +0.1
239,720 - GFF4452 0.82 +0.4
239,722 + GFF4452 0.83 -0.3
239,806 + +0.0
240,167 - GFF4453 0.50 -0.7
240,167 - GFF4453 0.50 +0.4
240,351 - GFF4453 0.86 -1.4
240,353 - GFF4453 0.86 -1.0
240,422 + +0.3
240,423 - -0.1
240,471 + -0.0
240,539 + GFF4454 0.11 -1.0
241,063 + -0.3
241,108 + -0.2
241,789 + GFF4455 0.11 -0.0
242,021 - GFF4455 0.44 +0.2
242,088 - GFF4455 0.53 +0.1

Or see this region's nucleotide sequence