Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4258

Experiment: LB_plus_SM_buffer with Ffm_phage 18.75 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4257 and GFF4258 are separated by 163 nucleotidesGFF4258 and GFF4259 are separated by 40 nucleotidesGFF4259 and GFF4260 are separated by 231 nucleotides GFF4257 - Transcriptional regulator, AraC family, at 41,725 to 42,729 GFF4257 GFF4258 - Ferrichrome-iron receptor, at 42,893 to 44,983 GFF4258 GFF4259 - Threonine efflux protein, at 45,024 to 45,656 GFF4259 GFF4260 - FIG00639237: hypothetical protein, at 45,888 to 46,163 GFF4260 Position (kb) 42 43 44 45Strain fitness (log2 ratio) -2 -1 0 1at 41.917 kb on - strand, within GFF4257at 41.917 kb on - strand, within GFF4257at 41.939 kb on + strand, within GFF4257at 41.939 kb on + strand, within GFF4257at 41.940 kb on - strand, within GFF4257at 41.940 kb on - strand, within GFF4257at 41.947 kb on + strand, within GFF4257at 41.948 kb on - strand, within GFF4257at 41.980 kb on + strand, within GFF4257at 41.981 kb on - strand, within GFF4257at 41.981 kb on - strand, within GFF4257at 41.981 kb on - strand, within GFF4257at 41.982 kb on + strand, within GFF4257at 41.982 kb on + strand, within GFF4257at 41.983 kb on - strand, within GFF4257at 42.004 kb on - strand, within GFF4257at 42.142 kb on + strand, within GFF4257at 42.299 kb on + strand, within GFF4257at 42.334 kb on + strand, within GFF4257at 42.521 kb on - strand, within GFF4257at 42.521 kb on - strand, within GFF4257at 42.827 kb on + strandat 42.828 kb on - strandat 42.828 kb on - strandat 42.865 kb on + strandat 43.069 kb on + strandat 43.142 kb on + strand, within GFF4258at 43.178 kb on + strand, within GFF4258at 43.186 kb on - strand, within GFF4258at 43.186 kb on - strand, within GFF4258at 43.207 kb on + strand, within GFF4258at 43.223 kb on + strand, within GFF4258at 43.427 kb on - strand, within GFF4258at 43.585 kb on + strand, within GFF4258at 43.609 kb on + strand, within GFF4258at 43.685 kb on - strand, within GFF4258at 43.731 kb on - strand, within GFF4258at 43.769 kb on - strand, within GFF4258at 43.853 kb on + strand, within GFF4258at 44.020 kb on + strand, within GFF4258at 44.020 kb on + strand, within GFF4258at 44.024 kb on - strand, within GFF4258at 44.073 kb on - strand, within GFF4258at 44.095 kb on + strand, within GFF4258at 44.096 kb on - strand, within GFF4258at 44.103 kb on - strand, within GFF4258at 44.103 kb on - strand, within GFF4258at 44.104 kb on + strand, within GFF4258at 44.141 kb on + strand, within GFF4258at 44.142 kb on - strand, within GFF4258at 44.179 kb on + strand, within GFF4258at 44.465 kb on - strand, within GFF4258at 44.501 kb on - strand, within GFF4258at 44.536 kb on + strand, within GFF4258at 44.536 kb on + strand, within GFF4258at 44.598 kb on - strand, within GFF4258at 44.600 kb on - strand, within GFF4258at 44.603 kb on + strand, within GFF4258at 44.603 kb on + strand, within GFF4258at 44.603 kb on + strand, within GFF4258at 44.603 kb on + strand, within GFF4258at 44.603 kb on + strand, within GFF4258at 44.604 kb on - strand, within GFF4258at 44.605 kb on + strand, within GFF4258at 44.605 kb on + strand, within GFF4258at 44.618 kb on + strand, within GFF4258at 44.696 kb on + strand, within GFF4258at 44.783 kb on - strandat 44.801 kb on + strandat 44.801 kb on + strandat 44.802 kb on - strandat 44.803 kb on + strandat 44.804 kb on - strandat 44.804 kb on - strandat 44.823 kb on + strandat 44.829 kb on - strandat 44.850 kb on + strandat 44.927 kb on + strandat 44.928 kb on - strandat 44.928 kb on - strandat 44.958 kb on + strandat 44.985 kb on - strandat 45.047 kb on - strandat 45.237 kb on - strand, within GFF4259at 45.405 kb on + strand, within GFF4259at 45.406 kb on - strand, within GFF4259at 45.409 kb on + strand, within GFF4259at 45.409 kb on + strand, within GFF4259at 45.686 kb on - strandat 45.700 kb on + strandat 45.703 kb on + strandat 45.805 kb on + strandat 45.806 kb on - strandat 45.848 kb on + strandat 45.908 kb on + strandat 45.945 kb on + strand, within GFF4260

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Ffm_phage 18.75 MOI
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41,917 - GFF4257 0.19 -0.1
41,917 - GFF4257 0.19 +0.3
41,939 + GFF4257 0.21 +0.2
41,939 + GFF4257 0.21 +1.1
41,940 - GFF4257 0.21 -0.1
41,940 - GFF4257 0.21 +0.2
41,947 + GFF4257 0.22 -0.3
41,948 - GFF4257 0.22 +0.2
41,980 + GFF4257 0.25 +1.5
41,981 - GFF4257 0.25 +0.3
41,981 - GFF4257 0.25 +0.1
41,981 - GFF4257 0.25 -0.1
41,982 + GFF4257 0.26 +0.1
41,982 + GFF4257 0.26 +0.8
41,983 - GFF4257 0.26 -0.3
42,004 - GFF4257 0.28 +0.5
42,142 + GFF4257 0.41 -0.2
42,299 + GFF4257 0.57 -0.1
42,334 + GFF4257 0.61 +0.2
42,521 - GFF4257 0.79 -0.4
42,521 - GFF4257 0.79 +0.3
42,827 + -0.1
42,828 - -0.1
42,828 - -0.2
42,865 + -0.0
43,069 + -0.0
43,142 + GFF4258 0.12 -0.2
43,178 + GFF4258 0.14 +0.2
43,186 - GFF4258 0.14 -2.1
43,186 - GFF4258 0.14 +0.0
43,207 + GFF4258 0.15 +0.1
43,223 + GFF4258 0.16 -0.9
43,427 - GFF4258 0.26 +0.2
43,585 + GFF4258 0.33 -0.2
43,609 + GFF4258 0.34 +0.3
43,685 - GFF4258 0.38 -0.9
43,731 - GFF4258 0.40 +0.0
43,769 - GFF4258 0.42 -0.6
43,853 + GFF4258 0.46 -0.6
44,020 + GFF4258 0.54 -0.5
44,020 + GFF4258 0.54 -0.2
44,024 - GFF4258 0.54 -0.2
44,073 - GFF4258 0.56 +0.1
44,095 + GFF4258 0.57 -0.6
44,096 - GFF4258 0.58 -0.6
44,103 - GFF4258 0.58 +0.3
44,103 - GFF4258 0.58 +0.1
44,104 + GFF4258 0.58 +0.9
44,141 + GFF4258 0.60 -0.2
44,142 - GFF4258 0.60 -0.1
44,179 + GFF4258 0.62 -0.2
44,465 - GFF4258 0.75 -0.0
44,501 - GFF4258 0.77 -0.5
44,536 + GFF4258 0.79 +0.3
44,536 + GFF4258 0.79 +0.0
44,598 - GFF4258 0.82 -0.5
44,600 - GFF4258 0.82 +0.3
44,603 + GFF4258 0.82 -0.1
44,603 + GFF4258 0.82 -0.8
44,603 + GFF4258 0.82 +0.0
44,603 + GFF4258 0.82 -0.3
44,603 + GFF4258 0.82 +0.6
44,604 - GFF4258 0.82 +0.2
44,605 + GFF4258 0.82 +0.1
44,605 + GFF4258 0.82 -0.3
44,618 + GFF4258 0.82 -0.2
44,696 + GFF4258 0.86 -0.7
44,783 - +0.8
44,801 + +0.6
44,801 + -0.6
44,802 - -0.1
44,803 + +0.1
44,804 - +0.9
44,804 - -1.0
44,823 + +0.6
44,829 - -0.4
44,850 + +0.4
44,927 + -0.7
44,928 - +0.5
44,928 - -1.5
44,958 + -0.1
44,985 - +0.4
45,047 - -0.3
45,237 - GFF4259 0.34 +0.0
45,405 + GFF4259 0.60 +0.2
45,406 - GFF4259 0.60 -0.4
45,409 + GFF4259 0.61 -0.3
45,409 + GFF4259 0.61 +0.4
45,686 - +0.7
45,700 + +0.1
45,703 + -0.1
45,805 + -0.1
45,806 - -0.4
45,848 + +0.0
45,908 + +0.4
45,945 + GFF4260 0.21 -0.3

Or see this region's nucleotide sequence