Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF367

Experiment: LB_plus_SM_buffer with Ffm_phage 18.75 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF365 and GFF366 are separated by 125 nucleotidesGFF366 and GFF367 are separated by 78 nucleotidesGFF367 and GFF368 are separated by 77 nucleotidesGFF368 and GFF369 are separated by 107 nucleotides GFF365 - Protein YicC, at 84,694 to 85,557 GFF365 GFF366 - Ribonuclease PH (EC 2.7.7.56), at 85,683 to 86,399 GFF366 GFF367 - Orotate phosphoribosyltransferase (EC 2.4.2.10), at 86,478 to 87,119 GFF367 GFF368 - Transcriptional regulator SlmA, TetR family, at 87,197 to 87,793 GFF368 GFF369 - 'Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23)' transl_table=11, at 87,901 to 88,356 GFF369 Position (kb) 86 87 88Strain fitness (log2 ratio) -1 0 1at 85.594 kb on - strandat 85.595 kb on + strandat 85.596 kb on - strandat 85.596 kb on - strandat 85.596 kb on - strandat 85.600 kb on - strandat 85.600 kb on - strandat 85.600 kb on - strandat 85.625 kb on - strandat 85.625 kb on - strandat 85.642 kb on - strandat 85.642 kb on - strandat 85.740 kb on + strandat 85.788 kb on - strand, within GFF366at 85.788 kb on - strand, within GFF366at 86.035 kb on + strand, within GFF366at 86.036 kb on - strand, within GFF366at 86.282 kb on - strand, within GFF366at 86.488 kb on - strandat 86.546 kb on + strand, within GFF367at 86.598 kb on - strand, within GFF367at 86.825 kb on - strand, within GFF367at 86.868 kb on - strand, within GFF367at 86.894 kb on + strand, within GFF367at 86.997 kb on + strand, within GFF367at 87.005 kb on + strand, within GFF367at 87.006 kb on - strand, within GFF367at 87.006 kb on - strand, within GFF367at 87.006 kb on - strand, within GFF367at 87.006 kb on - strand, within GFF367at 87.006 kb on - strand, within GFF367at 87.151 kb on - strandat 87.151 kb on - strandat 87.290 kb on - strand, within GFF368at 87.343 kb on - strand, within GFF368at 87.375 kb on - strand, within GFF368at 87.844 kb on - strandat 87.875 kb on + strandat 87.875 kb on + strandat 87.902 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Ffm_phage 18.75 MOI
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85,594 - -0.2
85,595 + -1.2
85,596 - +0.2
85,596 - +0.1
85,596 - +0.3
85,600 - -0.9
85,600 - -0.0
85,600 - +0.2
85,625 - +0.5
85,625 - -0.3
85,642 - -0.4
85,642 - -0.1
85,740 + -0.8
85,788 - GFF366 0.15 -1.4
85,788 - GFF366 0.15 -1.2
86,035 + GFF366 0.49 -0.2
86,036 - GFF366 0.49 -0.2
86,282 - GFF366 0.84 +0.8
86,488 - -0.4
86,546 + GFF367 0.11 -0.6
86,598 - GFF367 0.19 +0.3
86,825 - GFF367 0.54 -0.8
86,868 - GFF367 0.61 +0.3
86,894 + GFF367 0.65 -0.0
86,997 + GFF367 0.81 -0.3
87,005 + GFF367 0.82 -0.9
87,006 - GFF367 0.82 -0.5
87,006 - GFF367 0.82 -0.1
87,006 - GFF367 0.82 -0.9
87,006 - GFF367 0.82 +0.0
87,006 - GFF367 0.82 -0.9
87,151 - -0.3
87,151 - -0.8
87,290 - GFF368 0.16 -0.5
87,343 - GFF368 0.24 +0.3
87,375 - GFF368 0.30 +0.1
87,844 - -0.2
87,875 + +0.5
87,875 + +0.0
87,902 + -0.1

Or see this region's nucleotide sequence