Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2289

Experiment: LB_plus_SM_buffer with Ffm_phage 18.75 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2288 and GFF2289 are separated by 62 nucleotidesGFF2289 and GFF2290 are separated by 97 nucleotidesGFF2290 and GFF2291 are separated by 15 nucleotidesGFF2291 and GFF2292 are separated by 89 nucleotidesGFF2292 and GFF2293 are separated by 13 nucleotides GFF2288 - ADP-ribosylglycohydrolase (EC 3.2.-.-), at 76,842 to 77,882 GFF2288 GFF2289 - Transcriptional regulator, GntR family, at 77,945 to 78,667 GFF2289 GFF2290 - Putative periplasmic protein, at 78,765 to 78,929 GFF2290 GFF2291 - Putative periplasmic protein, at 78,945 to 79,076 GFF2291 GFF2292 - Mannose-6-phosphate isomerase (EC 5.3.1.8), at 79,166 to 79,516 GFF2292 GFF2293 - Autoinducer 2 (AI-2) kinase LsrK (EC 2.7.1.-), at 79,530 to 81,080 GFF2293 Position (kb) 77 78 79Strain fitness (log2 ratio) -2 -1 0 1at 77.049 kb on + strand, within GFF2288at 77.049 kb on + strand, within GFF2288at 77.049 kb on + strand, within GFF2288at 77.050 kb on - strand, within GFF2288at 77.050 kb on - strand, within GFF2288at 77.139 kb on + strand, within GFF2288at 77.242 kb on + strand, within GFF2288at 77.327 kb on + strand, within GFF2288at 77.478 kb on + strand, within GFF2288at 77.478 kb on + strand, within GFF2288at 77.479 kb on - strand, within GFF2288at 77.479 kb on - strand, within GFF2288at 77.570 kb on - strand, within GFF2288at 77.712 kb on - strand, within GFF2288at 77.714 kb on + strand, within GFF2288at 77.714 kb on + strand, within GFF2288at 77.714 kb on + strand, within GFF2288at 77.741 kb on + strand, within GFF2288at 77.979 kb on - strandat 77.981 kb on - strandat 78.045 kb on + strand, within GFF2289at 78.134 kb on - strand, within GFF2289at 78.191 kb on + strand, within GFF2289at 78.192 kb on - strand, within GFF2289at 78.211 kb on + strand, within GFF2289at 78.330 kb on - strand, within GFF2289at 78.330 kb on - strand, within GFF2289at 78.337 kb on + strand, within GFF2289at 78.337 kb on + strand, within GFF2289at 78.373 kb on + strand, within GFF2289at 78.388 kb on - strand, within GFF2289at 78.389 kb on + strand, within GFF2289at 78.445 kb on + strand, within GFF2289at 78.445 kb on + strand, within GFF2289at 78.446 kb on - strand, within GFF2289at 78.446 kb on - strand, within GFF2289at 78.465 kb on + strand, within GFF2289at 78.554 kb on - strand, within GFF2289at 78.700 kb on + strandat 78.701 kb on - strandat 78.712 kb on - strandat 78.764 kb on + strandat 78.765 kb on - strandat 78.765 kb on - strandat 78.819 kb on - strand, within GFF2290at 79.167 kb on + strandat 79.264 kb on - strand, within GFF2292at 79.289 kb on + strand, within GFF2292at 79.313 kb on - strand, within GFF2292at 79.353 kb on - strand, within GFF2292at 79.358 kb on - strand, within GFF2292at 79.378 kb on + strand, within GFF2292at 79.379 kb on - strand, within GFF2292at 79.381 kb on + strand, within GFF2292at 79.382 kb on - strand, within GFF2292at 79.382 kb on - strand, within GFF2292at 79.418 kb on + strand, within GFF2292at 79.418 kb on + strand, within GFF2292at 79.418 kb on + strand, within GFF2292at 79.652 kb on + strandat 79.653 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Ffm_phage 18.75 MOI
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77,049 + GFF2288 0.20 -0.5
77,049 + GFF2288 0.20 +0.2
77,049 + GFF2288 0.20 +0.4
77,050 - GFF2288 0.20 +0.1
77,050 - GFF2288 0.20 +0.4
77,139 + GFF2288 0.29 -0.1
77,242 + GFF2288 0.38 +0.1
77,327 + GFF2288 0.47 +0.4
77,478 + GFF2288 0.61 +0.3
77,478 + GFF2288 0.61 +0.4
77,479 - GFF2288 0.61 -0.4
77,479 - GFF2288 0.61 +0.1
77,570 - GFF2288 0.70 -0.2
77,712 - GFF2288 0.84 +0.0
77,714 + GFF2288 0.84 -2.1
77,714 + GFF2288 0.84 +1.0
77,714 + GFF2288 0.84 -0.0
77,741 + GFF2288 0.86 +0.2
77,979 - -0.4
77,981 - -0.7
78,045 + GFF2289 0.14 -0.4
78,134 - GFF2289 0.26 +0.1
78,191 + GFF2289 0.34 -0.4
78,192 - GFF2289 0.34 +0.1
78,211 + GFF2289 0.37 +0.4
78,330 - GFF2289 0.53 -0.1
78,330 - GFF2289 0.53 -0.2
78,337 + GFF2289 0.54 -0.0
78,337 + GFF2289 0.54 -0.2
78,373 + GFF2289 0.59 -1.1
78,388 - GFF2289 0.61 +0.1
78,389 + GFF2289 0.61 -0.3
78,445 + GFF2289 0.69 -0.7
78,445 + GFF2289 0.69 -0.5
78,446 - GFF2289 0.69 -0.1
78,446 - GFF2289 0.69 -1.2
78,465 + GFF2289 0.72 +0.0
78,554 - GFF2289 0.84 -0.5
78,700 + +0.1
78,701 - +0.1
78,712 - -0.3
78,764 + +0.7
78,765 - -0.0
78,765 - -0.2
78,819 - GFF2290 0.33 +0.7
79,167 + -0.6
79,264 - GFF2292 0.28 +0.4
79,289 + GFF2292 0.35 +0.1
79,313 - GFF2292 0.42 -0.1
79,353 - GFF2292 0.53 +0.2
79,358 - GFF2292 0.55 +0.7
79,378 + GFF2292 0.60 -0.1
79,379 - GFF2292 0.61 +0.1
79,381 + GFF2292 0.61 -0.1
79,382 - GFF2292 0.62 +1.4
79,382 - GFF2292 0.62 +1.1
79,418 + GFF2292 0.72 +0.1
79,418 + GFF2292 0.72 +0.1
79,418 + GFF2292 0.72 -0.1
79,652 + -0.2
79,653 - -0.1

Or see this region's nucleotide sequence