Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04158 and ECD_04159 overlap by 4 nucleotides ECD_04159 and ECD_04160 are separated by 291 nucleotides
ECD_04158: ECD_04158 - anti-sigma transmembrane signal transducer for ferric citrate transport; periplasmic FecA-bound ferric citrate sensor and cytoplasmic FecI ECF sigma factor activator, at 4,430,161 to 4,431,114
_04158
ECD_04159: ECD_04159 - RNA polymerase sigma-19 factor, fec operon-specific; ECF sigma factor, at 4,431,111 to 4,431,632
_04159
ECD_04160: ECD_04160 - IS1 protein InsA, at 4,431,924 to 4,432,199
_04160
Position (kb) 4431
4432
4433 Strain fitness (log2 ratio) -1
0
1 at 4430.996 kb on + strand, within ECD_04158 at 4430.997 kb on - strand, within ECD_04158 at 4430.997 kb on - strand, within ECD_04158 at 4430.997 kb on - strand, within ECD_04158 at 4431.047 kb on - strand at 4431.057 kb on - strand at 4431.121 kb on + strand at 4431.121 kb on + strand at 4431.217 kb on + strand, within ECD_04159 at 4431.218 kb on - strand, within ECD_04159 at 4431.300 kb on + strand, within ECD_04159 at 4431.301 kb on - strand, within ECD_04159 at 4431.376 kb on + strand, within ECD_04159 at 4431.583 kb on + strand at 4431.614 kb on + strand at 4431.652 kb on - strand at 4431.663 kb on - strand at 4431.669 kb on - strand at 4431.672 kb on - strand at 4431.754 kb on + strand at 4431.759 kb on + strand at 4431.829 kb on + strand at 4431.829 kb on + strand at 4431.830 kb on - strand at 4431.898 kb on + strand at 4431.898 kb on + strand at 4431.898 kb on + strand at 4431.898 kb on + strand at 4431.899 kb on - strand at 4431.899 kb on - strand at 4431.912 kb on + strand at 4432.012 kb on - strand, within ECD_04160 at 4432.045 kb on + strand, within ECD_04160 at 4432.045 kb on + strand, within ECD_04160 at 4432.045 kb on + strand, within ECD_04160 at 4432.045 kb on + strand, within ECD_04160 at 4432.166 kb on - strand, within ECD_04160 at 4432.209 kb on + strand at 4432.262 kb on + strand at 4432.263 kb on - strand at 4432.409 kb on + strand at 4432.409 kb on + strand at 4432.409 kb on + strand at 4432.409 kb on + strand at 4432.410 kb on - strand at 4432.410 kb on - strand at 4432.410 kb on - strand at 4432.433 kb on + strand at 4432.479 kb on - strand at 4432.545 kb on + strand at 4432.619 kb on + strand at 4432.656 kb on - strand at 4432.661 kb on - strand at 4432.666 kb on + strand at 4432.683 kb on + strand at 4432.683 kb on + strand at 4432.684 kb on - strand at 4432.687 kb on + strand at 4432.687 kb on + strand at 4432.724 kb on - strand at 4432.886 kb on - strand at 4432.910 kb on + strand at 4432.946 kb on + strand at 4433.083 kb on + strand at 4433.083 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 4,430,996 + ECD_04158 0.88 -0.2 4,430,997 - ECD_04158 0.88 -0.5 4,430,997 - ECD_04158 0.88 +0.2 4,430,997 - ECD_04158 0.88 +0.3 4,431,047 - -0.1 4,431,057 - +0.1 4,431,121 + -0.3 4,431,121 + -0.5 4,431,217 + ECD_04159 0.20 -0.1 4,431,218 - ECD_04159 0.20 +0.6 4,431,300 + ECD_04159 0.36 +0.0 4,431,301 - ECD_04159 0.36 +0.4 4,431,376 + ECD_04159 0.51 +0.9 4,431,583 + -0.2 4,431,614 + -0.4 4,431,652 - +0.6 4,431,663 - -0.2 4,431,669 - +0.1 4,431,672 - +0.1 4,431,754 + -0.1 4,431,759 + +0.5 4,431,829 + -0.4 4,431,829 + -0.1 4,431,830 - +1.0 4,431,898 + -0.1 4,431,898 + +0.6 4,431,898 + +0.5 4,431,898 + +0.6 4,431,899 - +0.3 4,431,899 - -0.3 4,431,912 + +0.2 4,432,012 - ECD_04160 0.32 +0.3 4,432,045 + ECD_04160 0.44 +0.0 4,432,045 + ECD_04160 0.44 +0.6 4,432,045 + ECD_04160 0.44 +0.6 4,432,045 + ECD_04160 0.44 +0.2 4,432,166 - ECD_04160 0.88 +1.1 4,432,209 + +0.1 4,432,262 + -0.0 4,432,263 - -0.1 4,432,409 + +0.0 4,432,409 + -0.3 4,432,409 + -0.2 4,432,409 + +0.3 4,432,410 - +0.6 4,432,410 - -0.9 4,432,410 - -0.3 4,432,433 + +0.6 4,432,479 - +0.3 4,432,545 + -0.2 4,432,619 + -0.1 4,432,656 - +0.4 4,432,661 - -0.2 4,432,666 + -0.5 4,432,683 + +0.3 4,432,683 + -0.5 4,432,684 - -0.0 4,432,687 + +0.6 4,432,687 + +1.7 4,432,724 - -0.2 4,432,886 - +0.3 4,432,910 + +0.7 4,432,946 + +0.6 4,433,083 + -1.1 4,433,083 + +0.1
Or see this region's nucleotide sequence