Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04120 and ECD_04121 are separated by 161 nucleotides ECD_04121 and ECD_04122 are separated by 45 nucleotides ECD_04122 and ECD_04123 are separated by 192 nucleotides
ECD_04120: ECD_04120 - ornithine carbamoyltransferase 1, at 4,388,804 to 4,389,808
_04120
ECD_04121: ECD_04121 - protein inhibitor of RNase E, at 4,389,970 to 4,390,386
_04121
ECD_04122: ECD_04122 - GNAT family putative N-acetyltransferase, at 4,390,432 to 4,390,935
_04122
ECD_04123: ECD_04123 - DUF898 family inner membrane protein, at 4,391,128 to 4,392,324
_04123
Position (kb) 4389
4390
4391 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4389.049 kb on - strand, within ECD_04120 at 4389.110 kb on + strand, within ECD_04120 at 4389.110 kb on + strand, within ECD_04120 at 4389.110 kb on + strand, within ECD_04120 at 4389.111 kb on - strand, within ECD_04120 at 4389.120 kb on + strand, within ECD_04120 at 4389.121 kb on - strand, within ECD_04120 at 4389.121 kb on - strand, within ECD_04120 at 4389.121 kb on - strand, within ECD_04120 at 4389.121 kb on - strand, within ECD_04120 at 4389.124 kb on + strand, within ECD_04120 at 4389.124 kb on + strand, within ECD_04120 at 4389.125 kb on - strand, within ECD_04120 at 4389.153 kb on - strand, within ECD_04120 at 4389.153 kb on - strand, within ECD_04120 at 4389.153 kb on - strand, within ECD_04120 at 4389.328 kb on - strand, within ECD_04120 at 4389.450 kb on + strand, within ECD_04120 at 4389.451 kb on - strand, within ECD_04120 at 4389.507 kb on + strand, within ECD_04120 at 4389.551 kb on - strand, within ECD_04120 at 4389.583 kb on - strand, within ECD_04120 at 4389.583 kb on - strand, within ECD_04120 at 4389.583 kb on - strand, within ECD_04120 at 4389.808 kb on + strand at 4389.808 kb on + strand at 4389.809 kb on - strand at 4389.809 kb on - strand at 4389.809 kb on - strand at 4389.956 kb on - strand at 4389.956 kb on - strand at 4389.956 kb on - strand at 4390.063 kb on + strand, within ECD_04121 at 4390.064 kb on - strand, within ECD_04121 at 4390.291 kb on + strand, within ECD_04121 at 4390.309 kb on + strand, within ECD_04121 at 4390.309 kb on + strand, within ECD_04121 at 4390.389 kb on - strand at 4390.397 kb on - strand at 4390.490 kb on + strand, within ECD_04122 at 4390.497 kb on + strand, within ECD_04122 at 4390.498 kb on - strand, within ECD_04122 at 4390.696 kb on + strand, within ECD_04122 at 4390.752 kb on - strand, within ECD_04122 at 4390.771 kb on - strand, within ECD_04122 at 4390.772 kb on + strand, within ECD_04122 at 4390.772 kb on + strand, within ECD_04122 at 4390.814 kb on + strand, within ECD_04122 at 4390.907 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 4,389,049 - ECD_04120 0.24 -1.9 4,389,110 + ECD_04120 0.30 -3.6 4,389,110 + ECD_04120 0.30 -2.4 4,389,110 + ECD_04120 0.30 -0.1 4,389,111 - ECD_04120 0.31 -2.5 4,389,120 + ECD_04120 0.31 -2.3 4,389,121 - ECD_04120 0.32 -1.7 4,389,121 - ECD_04120 0.32 -1.8 4,389,121 - ECD_04120 0.32 -1.6 4,389,121 - ECD_04120 0.32 -1.4 4,389,124 + ECD_04120 0.32 -1.0 4,389,124 + ECD_04120 0.32 -1.3 4,389,125 - ECD_04120 0.32 -1.4 4,389,153 - ECD_04120 0.35 -1.7 4,389,153 - ECD_04120 0.35 -1.4 4,389,153 - ECD_04120 0.35 -1.7 4,389,328 - ECD_04120 0.52 -1.5 4,389,450 + ECD_04120 0.64 -1.3 4,389,451 - ECD_04120 0.64 -1.6 4,389,507 + ECD_04120 0.70 -1.0 4,389,551 - ECD_04120 0.74 -1.7 4,389,583 - ECD_04120 0.78 -1.0 4,389,583 - ECD_04120 0.78 -2.1 4,389,583 - ECD_04120 0.78 -1.9 4,389,808 + -1.8 4,389,808 + -1.8 4,389,809 - -2.4 4,389,809 - -2.9 4,389,809 - -1.5 4,389,956 - +0.1 4,389,956 - +1.1 4,389,956 - +0.2 4,390,063 + ECD_04121 0.22 -0.1 4,390,064 - ECD_04121 0.23 +0.3 4,390,291 + ECD_04121 0.77 +0.2 4,390,309 + ECD_04121 0.81 -0.5 4,390,309 + ECD_04121 0.81 +0.5 4,390,389 - -0.3 4,390,397 - +0.4 4,390,490 + ECD_04122 0.12 +0.1 4,390,497 + ECD_04122 0.13 -0.5 4,390,498 - ECD_04122 0.13 -0.4 4,390,696 + ECD_04122 0.52 -0.2 4,390,752 - ECD_04122 0.63 -0.3 4,390,771 - ECD_04122 0.67 +0.3 4,390,772 + ECD_04122 0.67 +0.3 4,390,772 + ECD_04122 0.67 -0.4 4,390,814 + ECD_04122 0.76 +0.5 4,390,907 - +0.2
Or see this region's nucleotide sequence