Strain Fitness in Escherichia coli BL21 around ECD_03986

Experiment: Mixed culture, Halobacteriovorax-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03985 and ECD_03986 are separated by 103 nucleotidesECD_03986 and ECD_03987 are separated by 136 nucleotides ECD_03985: ECD_03985 - lipid A phosphoethanolamine transferase, at 4,241,026 to 4,242,669 _03985 ECD_03986: ECD_03986 - arginine:agmatine antiporter, at 4,242,773 to 4,244,110 _03986 ECD_03987: ECD_03987 - adi system transcriptional activator, at 4,244,247 to 4,245,008 _03987 Position (kb) 4242 4243 4244 4245Strain fitness (log2 ratio) -1 0 1at 4241.778 kb on - strand, within ECD_03985at 4241.794 kb on - strand, within ECD_03985at 4241.794 kb on - strand, within ECD_03985at 4241.859 kb on - strand, within ECD_03985at 4241.889 kb on + strand, within ECD_03985at 4242.054 kb on - strand, within ECD_03985at 4242.092 kb on - strand, within ECD_03985at 4242.114 kb on + strand, within ECD_03985at 4242.134 kb on + strand, within ECD_03985at 4242.134 kb on + strand, within ECD_03985at 4242.135 kb on - strand, within ECD_03985at 4242.173 kb on - strand, within ECD_03985at 4242.176 kb on - strand, within ECD_03985at 4242.176 kb on - strand, within ECD_03985at 4242.340 kb on - strand, within ECD_03985at 4242.340 kb on - strand, within ECD_03985at 4242.345 kb on + strand, within ECD_03985at 4242.384 kb on - strand, within ECD_03985at 4242.392 kb on - strand, within ECD_03985at 4242.448 kb on - strand, within ECD_03985at 4242.448 kb on - strand, within ECD_03985at 4242.455 kb on - strand, within ECD_03985at 4242.467 kb on - strand, within ECD_03985at 4242.467 kb on - strand, within ECD_03985at 4242.480 kb on + strand, within ECD_03985at 4242.481 kb on - strand, within ECD_03985at 4242.483 kb on + strand, within ECD_03985at 4242.527 kb on - strandat 4242.595 kb on - strandat 4242.595 kb on - strandat 4242.595 kb on - strandat 4242.602 kb on + strandat 4242.603 kb on - strandat 4242.603 kb on - strandat 4242.632 kb on - strandat 4242.751 kb on - strandat 4242.814 kb on + strandat 4242.815 kb on - strandat 4242.840 kb on + strandat 4242.840 kb on + strandat 4242.840 kb on + strandat 4242.840 kb on + strandat 4242.840 kb on + strandat 4242.841 kb on - strandat 4242.841 kb on - strandat 4242.841 kb on - strandat 4242.841 kb on - strandat 4242.880 kb on + strandat 4242.881 kb on - strandat 4242.881 kb on - strandat 4242.881 kb on - strandat 4242.881 kb on - strandat 4242.922 kb on - strand, within ECD_03986at 4242.937 kb on + strand, within ECD_03986at 4242.937 kb on + strand, within ECD_03986at 4242.941 kb on - strand, within ECD_03986at 4242.941 kb on - strand, within ECD_03986at 4242.951 kb on + strand, within ECD_03986at 4242.968 kb on - strand, within ECD_03986at 4242.995 kb on + strand, within ECD_03986at 4243.012 kb on - strand, within ECD_03986at 4243.012 kb on - strand, within ECD_03986at 4243.017 kb on + strand, within ECD_03986at 4243.018 kb on - strand, within ECD_03986at 4243.031 kb on - strand, within ECD_03986at 4243.250 kb on + strand, within ECD_03986at 4243.251 kb on - strand, within ECD_03986at 4243.384 kb on + strand, within ECD_03986at 4243.391 kb on + strand, within ECD_03986at 4243.391 kb on + strand, within ECD_03986at 4243.391 kb on + strand, within ECD_03986at 4243.391 kb on + strand, within ECD_03986at 4243.391 kb on + strand, within ECD_03986at 4243.391 kb on + strand, within ECD_03986at 4243.392 kb on - strand, within ECD_03986at 4243.395 kb on + strand, within ECD_03986at 4243.395 kb on + strand, within ECD_03986at 4243.396 kb on - strand, within ECD_03986at 4243.396 kb on - strand, within ECD_03986at 4243.396 kb on - strand, within ECD_03986at 4243.416 kb on - strand, within ECD_03986at 4243.416 kb on - strand, within ECD_03986at 4243.525 kb on + strand, within ECD_03986at 4243.525 kb on + strand, within ECD_03986at 4243.576 kb on + strand, within ECD_03986at 4243.578 kb on + strand, within ECD_03986at 4243.578 kb on + strand, within ECD_03986at 4243.579 kb on - strand, within ECD_03986at 4243.579 kb on - strand, within ECD_03986at 4243.579 kb on - strand, within ECD_03986at 4243.579 kb on - strand, within ECD_03986at 4243.579 kb on - strand, within ECD_03986at 4243.579 kb on - strand, within ECD_03986at 4243.610 kb on + strand, within ECD_03986at 4243.739 kb on + strand, within ECD_03986at 4243.739 kb on + strand, within ECD_03986at 4243.740 kb on - strand, within ECD_03986at 4243.740 kb on - strand, within ECD_03986at 4243.771 kb on - strand, within ECD_03986at 4243.775 kb on + strand, within ECD_03986at 4243.776 kb on - strand, within ECD_03986at 4243.776 kb on - strand, within ECD_03986at 4243.779 kb on + strand, within ECD_03986at 4243.833 kb on + strand, within ECD_03986at 4243.851 kb on + strand, within ECD_03986at 4243.891 kb on - strand, within ECD_03986at 4243.933 kb on - strand, within ECD_03986at 4243.934 kb on + strand, within ECD_03986at 4243.934 kb on + strand, within ECD_03986at 4243.934 kb on + strand, within ECD_03986at 4243.935 kb on - strand, within ECD_03986at 4243.935 kb on - strand, within ECD_03986at 4243.980 kb on + strandat 4243.980 kb on + strandat 4243.981 kb on - strandat 4244.041 kb on + strandat 4244.042 kb on - strandat 4244.045 kb on - strandat 4244.111 kb on - strandat 4244.111 kb on - strandat 4244.186 kb on + strandat 4244.225 kb on - strandat 4244.225 kb on - strandat 4244.336 kb on + strand, within ECD_03987at 4244.494 kb on - strand, within ECD_03987at 4244.577 kb on - strand, within ECD_03987at 4244.859 kb on - strand, within ECD_03987at 4245.008 kb on + strandat 4245.009 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1
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4,241,778 - ECD_03985 0.46 +0.7
4,241,794 - ECD_03985 0.47 -0.5
4,241,794 - ECD_03985 0.47 +0.0
4,241,859 - ECD_03985 0.51 +0.4
4,241,889 + ECD_03985 0.52 +0.2
4,242,054 - ECD_03985 0.63 -1.6
4,242,092 - ECD_03985 0.65 -0.5
4,242,114 + ECD_03985 0.66 -0.2
4,242,134 + ECD_03985 0.67 -0.5
4,242,134 + ECD_03985 0.67 -0.5
4,242,135 - ECD_03985 0.67 -0.0
4,242,173 - ECD_03985 0.70 +0.1
4,242,176 - ECD_03985 0.70 -0.1
4,242,176 - ECD_03985 0.70 +0.0
4,242,340 - ECD_03985 0.80 +0.1
4,242,340 - ECD_03985 0.80 +0.1
4,242,345 + ECD_03985 0.80 +0.8
4,242,384 - ECD_03985 0.83 +0.3
4,242,392 - ECD_03985 0.83 -0.3
4,242,448 - ECD_03985 0.86 -0.0
4,242,448 - ECD_03985 0.86 -0.0
4,242,455 - ECD_03985 0.87 -0.3
4,242,467 - ECD_03985 0.88 +1.0
4,242,467 - ECD_03985 0.88 -0.0
4,242,480 + ECD_03985 0.88 +0.1
4,242,481 - ECD_03985 0.89 +0.2
4,242,483 + ECD_03985 0.89 +0.3
4,242,527 - +0.2
4,242,595 - +0.1
4,242,595 - -0.1
4,242,595 - +0.4
4,242,602 + -0.2
4,242,603 - -0.2
4,242,603 - +0.4
4,242,632 - +0.1
4,242,751 - -0.9
4,242,814 + -0.4
4,242,815 - -0.6
4,242,840 + +0.0
4,242,840 + +0.6
4,242,840 + -0.0
4,242,840 + -0.2
4,242,840 + -0.3
4,242,841 - -0.0
4,242,841 - -0.7
4,242,841 - -0.1
4,242,841 - +0.3
4,242,880 + -0.3
4,242,881 - +0.3
4,242,881 - +0.1
4,242,881 - -0.3
4,242,881 - +0.8
4,242,922 - ECD_03986 0.11 -0.0
4,242,937 + ECD_03986 0.12 -0.0
4,242,937 + ECD_03986 0.12 -0.4
4,242,941 - ECD_03986 0.13 +0.4
4,242,941 - ECD_03986 0.13 +0.0
4,242,951 + ECD_03986 0.13 -0.2
4,242,968 - ECD_03986 0.15 -0.8
4,242,995 + ECD_03986 0.17 +1.0
4,243,012 - ECD_03986 0.18 +0.1
4,243,012 - ECD_03986 0.18 -0.0
4,243,017 + ECD_03986 0.18 -0.6
4,243,018 - ECD_03986 0.18 +0.4
4,243,031 - ECD_03986 0.19 -0.1
4,243,250 + ECD_03986 0.36 -0.3
4,243,251 - ECD_03986 0.36 -0.8
4,243,384 + ECD_03986 0.46 -0.2
4,243,391 + ECD_03986 0.46 +0.0
4,243,391 + ECD_03986 0.46 +1.0
4,243,391 + ECD_03986 0.46 -0.0
4,243,391 + ECD_03986 0.46 +0.5
4,243,391 + ECD_03986 0.46 +0.7
4,243,391 + ECD_03986 0.46 +0.1
4,243,392 - ECD_03986 0.46 -0.2
4,243,395 + ECD_03986 0.46 -0.0
4,243,395 + ECD_03986 0.46 +1.3
4,243,396 - ECD_03986 0.47 -0.8
4,243,396 - ECD_03986 0.47 -0.4
4,243,396 - ECD_03986 0.47 +0.6
4,243,416 - ECD_03986 0.48 -0.0
4,243,416 - ECD_03986 0.48 -0.4
4,243,525 + ECD_03986 0.56 +0.3
4,243,525 + ECD_03986 0.56 +0.8
4,243,576 + ECD_03986 0.60 +0.4
4,243,578 + ECD_03986 0.60 -0.3
4,243,578 + ECD_03986 0.60 -0.1
4,243,579 - ECD_03986 0.60 +0.4
4,243,579 - ECD_03986 0.60 +0.2
4,243,579 - ECD_03986 0.60 -0.1
4,243,579 - ECD_03986 0.60 -0.8
4,243,579 - ECD_03986 0.60 -0.3
4,243,579 - ECD_03986 0.60 +1.5
4,243,610 + ECD_03986 0.63 +0.3
4,243,739 + ECD_03986 0.72 +0.4
4,243,739 + ECD_03986 0.72 +0.3
4,243,740 - ECD_03986 0.72 +0.2
4,243,740 - ECD_03986 0.72 -1.0
4,243,771 - ECD_03986 0.75 -0.0
4,243,775 + ECD_03986 0.75 -0.4
4,243,776 - ECD_03986 0.75 +0.9
4,243,776 - ECD_03986 0.75 +0.9
4,243,779 + ECD_03986 0.75 +0.1
4,243,833 + ECD_03986 0.79 +0.1
4,243,851 + ECD_03986 0.81 +0.4
4,243,891 - ECD_03986 0.84 +0.1
4,243,933 - ECD_03986 0.87 +0.1
4,243,934 + ECD_03986 0.87 -0.1
4,243,934 + ECD_03986 0.87 -1.4
4,243,934 + ECD_03986 0.87 +0.0
4,243,935 - ECD_03986 0.87 +1.6
4,243,935 - ECD_03986 0.87 +0.1
4,243,980 + +0.0
4,243,980 + -0.3
4,243,981 - +0.3
4,244,041 + +0.4
4,244,042 - -0.5
4,244,045 - -0.0
4,244,111 - +0.5
4,244,111 - +0.5
4,244,186 + +0.7
4,244,225 - -0.6
4,244,225 - +0.7
4,244,336 + ECD_03987 0.12 +0.1
4,244,494 - ECD_03987 0.32 +0.2
4,244,577 - ECD_03987 0.43 +0.3
4,244,859 - ECD_03987 0.80 -0.6
4,245,008 + +0.2
4,245,009 - +0.3

Or see this region's nucleotide sequence