Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03897 and ECD_03898 are separated by 498 nucleotides ECD_03898 and ECD_03899 are separated by 114 nucleotides ECD_03899 and ECD_03900 overlap by 4 nucleotides
ECD_03897: ECD_03897 - glucosephosphate isomerase, at 4,141,129 to 4,142,778
_03897
ECD_03898: ECD_03898 - extracellular polysaccharide production threonine-rich protein, at 4,143,277 to 4,143,519
_03898
ECD_03899: ECD_03899 - extracellular polysaccharide production lipoprotein, at 4,143,634 to 4,144,272
_03899
ECD_03900: ECD_03900 - extracellular polysaccharide export OMA protein, at 4,144,269 to 4,145,006
_03900
Position (kb)
4143
4144 Strain fitness (log2 ratio)
-1
0
1 at 4142.294 kb on - strand, within ECD_03897 at 4142.495 kb on - strand, within ECD_03897 at 4142.789 kb on + strand at 4142.790 kb on - strand at 4142.858 kb on - strand at 4142.867 kb on - strand at 4142.883 kb on - strand at 4142.883 kb on - strand at 4142.883 kb on - strand at 4142.886 kb on + strand at 4142.886 kb on + strand at 4142.887 kb on - strand at 4142.887 kb on - strand at 4142.887 kb on - strand at 4142.887 kb on - strand at 4142.887 kb on - strand at 4142.887 kb on - strand at 4142.907 kb on + strand at 4142.908 kb on - strand at 4142.908 kb on - strand at 4143.425 kb on + strand, within ECD_03898 at 4143.426 kb on - strand, within ECD_03898 at 4143.477 kb on + strand, within ECD_03898 at 4143.511 kb on - strand at 4143.520 kb on + strand at 4143.521 kb on - strand at 4143.525 kb on + strand at 4143.525 kb on + strand at 4143.525 kb on + strand at 4143.526 kb on - strand at 4143.526 kb on - strand at 4143.526 kb on - strand at 4143.526 kb on - strand at 4143.526 kb on - strand at 4143.529 kb on + strand at 4143.530 kb on - strand at 4143.571 kb on + strand at 4143.771 kb on + strand, within ECD_03899 at 4143.790 kb on + strand, within ECD_03899 at 4143.790 kb on + strand, within ECD_03899 at 4143.801 kb on + strand, within ECD_03899 at 4144.030 kb on + strand, within ECD_03899 at 4144.032 kb on + strand, within ECD_03899 at 4144.032 kb on + strand, within ECD_03899 at 4144.032 kb on + strand, within ECD_03899 at 4144.041 kb on - strand, within ECD_03899 at 4144.213 kb on + strand at 4144.214 kb on - strand at 4144.274 kb on + strand at 4144.275 kb on - strand at 4144.275 kb on - strand at 4144.397 kb on - strand, within ECD_03900
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 4,142,294 - ECD_03897 0.71 -1.3 4,142,495 - ECD_03897 0.83 -1.5 4,142,789 + +0.2 4,142,790 - +0.4 4,142,858 - +0.4 4,142,867 - -0.2 4,142,883 - +0.1 4,142,883 - -0.6 4,142,883 - +0.4 4,142,886 + +0.6 4,142,886 + +0.4 4,142,887 - +0.2 4,142,887 - -0.7 4,142,887 - -0.2 4,142,887 - -0.2 4,142,887 - +0.5 4,142,887 - +0.2 4,142,907 + -0.1 4,142,908 - -0.0 4,142,908 - +0.2 4,143,425 + ECD_03898 0.61 -0.2 4,143,426 - ECD_03898 0.61 +0.6 4,143,477 + ECD_03898 0.82 +0.4 4,143,511 - +0.1 4,143,520 + +0.2 4,143,521 - +0.0 4,143,525 + +0.3 4,143,525 + -0.5 4,143,525 + -0.0 4,143,526 - +0.9 4,143,526 - -0.3 4,143,526 - -0.3 4,143,526 - +0.5 4,143,526 - +0.3 4,143,529 + -0.5 4,143,530 - +0.9 4,143,571 + +0.3 4,143,771 + ECD_03899 0.21 +0.2 4,143,790 + ECD_03899 0.24 -0.2 4,143,790 + ECD_03899 0.24 +0.5 4,143,801 + ECD_03899 0.26 +0.0 4,144,030 + ECD_03899 0.62 +0.7 4,144,032 + ECD_03899 0.62 +0.1 4,144,032 + ECD_03899 0.62 -1.1 4,144,032 + ECD_03899 0.62 +0.2 4,144,041 - ECD_03899 0.64 +0.1 4,144,213 + -0.2 4,144,214 - +0.4 4,144,274 + +0.3 4,144,275 - -0.3 4,144,275 - +0.1 4,144,397 - ECD_03900 0.17 +0.4
Or see this region's nucleotide sequence