Strain Fitness in Escherichia coli BL21 around ECD_03652

Experiment: Mixed culture, Halobacteriovorax-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture, Halobacteriovorax-1
3,847,480	+		ECD_03651	0.35	-0.3
3,847,484	-		ECD_03651	0.35	-0.4
3,847,566	-		ECD_03651	0.44	-0.0
3,847,687	+		ECD_03651	0.58	-0.3
3,847,687	+		ECD_03651	0.58	-0.5
3,847,690	+		ECD_03651	0.58	-0.5
3,847,690	+		ECD_03651	0.58	-0.3
3,847,691	-		ECD_03651	0.58	-0.1
3,847,691	-		ECD_03651	0.58	+0.1
3,847,691	-		ECD_03651	0.58	+1.0
3,847,697	-		ECD_03651	0.59	-0.5
3,847,697	-		ECD_03651	0.59	-1.9
3,847,755	+		ECD_03651	0.66	-0.6
3,847,780	+		ECD_03651	0.68	-0.2
3,847,781	-		ECD_03651	0.68	-0.4
3,847,781	-		ECD_03651	0.68	-0.1
3,847,781	-		ECD_03651	0.68	+0.6
3,847,784	+		ECD_03651	0.69	-0.3
3,847,784	+		ECD_03651	0.69	+0.0
3,847,785	-		ECD_03651	0.69	-0.8
3,847,785	-		ECD_03651	0.69	+1.6
3,847,785	-		ECD_03651	0.69	-0.3
3,848,146	+				-0.4
3,848,146	+				-0.2
3,848,146	+				-0.5
3,848,146	+				-1.1
3,848,147	-				-0.3
3,848,147	-				-0.9
3,848,147	-				-0.1
3,848,147	-				-0.3
3,848,147	-				-0.4
3,848,148	+				+0.9
3,848,149	-				-0.1
3,848,183	+				-1.1
3,848,183	+				+0.1
3,848,183	+				-0.6
3,848,217	+				-0.6
3,848,221	+				-0.3
3,848,229	+				-0.8
3,848,229	+				-1.3
3,848,311	+				-0.7
3,848,311	+				-0.8
3,848,404	+		ECD_03652	0.13	-0.5
3,848,485	+		ECD_03652	0.18	-0.4
3,848,552	+		ECD_03652	0.23	-0.9
3,848,552	+		ECD_03652	0.23	-0.6
3,848,643	+		ECD_03652	0.29	+0.3
3,848,643	+		ECD_03652	0.29	+0.9
3,848,649	+		ECD_03652	0.30	-0.1
3,848,649	+		ECD_03652	0.30	-0.7
3,848,704	+		ECD_03652	0.33	-0.8
3,848,704	+		ECD_03652	0.33	-0.9
3,848,705	-		ECD_03652	0.33	-0.7
3,848,956	+		ECD_03652	0.50	-0.5
3,848,956	+		ECD_03652	0.50	-0.6
3,849,067	+		ECD_03652	0.58	-0.2
3,849,120	+		ECD_03652	0.62	-0.6
3,849,120	+		ECD_03652	0.62	+0.2
3,849,120	+		ECD_03652	0.62	+0.3
3,849,183	+		ECD_03652	0.66	-0.7
3,849,244	+		ECD_03652	0.70	-0.3
3,849,271	+		ECD_03652	0.72	-0.2
3,849,271	+		ECD_03652	0.72	-0.2
3,849,271	+		ECD_03652	0.72	+0.5
3,849,279	+		ECD_03652	0.72	-0.7
3,849,287	+		ECD_03652	0.73	+0.3
3,849,370	+		ECD_03652	0.78	-0.5
3,849,370	+		ECD_03652	0.78	-0.6
3,849,370	+		ECD_03652	0.78	-0.6
3,849,370	+		ECD_03652	0.78	-0.5
3,849,373	+		ECD_03652	0.79	-0.7
3,849,466	+		ECD_03652	0.85	-0.9
3,849,471	+		ECD_03652	0.85	+0.0
3,849,475	+		ECD_03652	0.86	-0.2
3,849,475	+		ECD_03652	0.86	-0.6
3,849,475	+		ECD_03652	0.86	-1.0
3,849,475	+		ECD_03652	0.86	-0.7
3,849,475	+		ECD_03652	0.86	-0.8
3,849,475	+		ECD_03652	0.86	-0.6
3,849,475	+		ECD_03652	0.86	-0.9
3,849,475	+		ECD_03652	0.86	-0.8
3,849,475	+		ECD_03652	0.86	-0.1
3,849,475	+		ECD_03652	0.86	-0.4
3,849,476	-		ECD_03652	0.86	-1.6
3,849,487	+		ECD_03652	0.86	-0.5
3,849,487	+		ECD_03652	0.86	-0.3
3,849,629	+				-0.7
3,849,629	+				-0.2
3,849,629	+				+1.2
3,849,629	+				-0.1
3,849,634	-				-1.7
3,849,649	+				+0.9
3,849,651	+				-0.5
3,849,651	+				-0.6
3,849,652	-				-0.9
3,849,652	-				-0.1
3,849,652	-				-0.0
3,849,652	-				+0.4
3,849,660	+				+0.2
3,849,669	+				-0.2
3,849,669	+				-0.3
3,849,670	-				-0.3
3,849,670	-				+0.3
3,849,670	-				+0.0
3,849,773	-				-0.2
3,849,773	-				-0.7
3,849,775	+				-0.2
3,849,775	+				+0.1
3,849,775	+				+0.3
3,849,775	+				+0.2
3,849,776	-				-0.4
3,849,785	-				+0.1
3,849,794	+				+0.3
3,849,794	+				-0.2
3,849,866	+		ECD_03653	0.33	+1.0
3,849,906	+		ECD_03653	0.47	-1.4
3,849,981	-		ECD_03653	0.73	+0.7
3,850,020	+		ECD_03653	0.87	+0.1
3,850,074	+				-1.0
3,850,118	+				-0.4
3,850,143	+				-0.3
3,850,144	-				-0.1
3,850,147	+				+0.0
3,850,147	+				+0.4
3,850,147	+				+0.2
3,850,147	+				+0.3
3,850,147	+				+0.1
3,850,147	+				-0.5
3,850,147	+				-0.3
3,850,147	+				-0.1
3,850,147	+				-0.1
3,850,147	+				-0.3
3,850,147	+				-0.6
3,850,147	+				+0.4
3,850,147	+				-0.1
3,850,147	+				+0.6
3,850,147	+				-0.2
3,850,148	-				+0.2
3,850,148	-				+0.1
3,850,148	-				+0.4
3,850,148	-				-0.1
3,850,148	-				+0.1
3,850,148	-				+0.3
3,850,148	-				+0.9
3,850,148	-				-0.4
3,850,148	-				-0.3
3,850,148	-				+0.4
3,850,148	-				-0.6
3,850,148	-				+0.2
3,850,148	-				-0.3
3,850,148	-				+0.2
3,850,148	-				+0.3
3,850,148	-				+0.6
3,850,148	-				-0.3
3,850,148	-				+0.7
3,850,148	-				+0.0
3,850,148	-				+0.8
3,850,148	-				+0.1
3,850,148	-				+0.2
3,850,148	-				-0.7
3,850,150	-				-0.1
3,850,214	-				-0.2
3,850,302	+		ECD_03654	0.17	+0.3
3,850,302	+		ECD_03654	0.17	+0.1
3,850,303	-		ECD_03654	0.18	+0.4
3,850,303	-		ECD_03654	0.18	-0.5
3,850,303	-		ECD_03654	0.18	-0.0
3,850,303	-		ECD_03654	0.18	+0.1
3,850,351	+		ECD_03654	0.35	+0.2
3,850,352	-		ECD_03654	0.36	+0.6
3,850,392	+		ECD_03654	0.50	-0.5
3,850,485	+		ECD_03654	0.84	+0.0
3,850,565	+				-0.1
3,850,565	+				+1.2
3,850,566	-				+0.1
3,850,566	-				+0.2
3,850,605	+				-0.9
3,850,606	-				-1.4
3,850,606	-				+0.2
3,850,608	+				+0.3
3,850,608	+				-0.0
3,850,608	+				+0.1
3,850,608	+				-0.6
3,850,608	+				-0.2
3,850,609	-				-0.2
3,850,609	-				-0.4
3,850,609	-				+0.2
3,850,609	-				-0.6
3,850,645	-				+0.2
3,850,648	+				+0.2
3,850,649	-				+0.6
3,850,649	-				+0.9
3,850,649	-				+1.0