Strain Fitness in Escherichia coli BL21 around ECD_03646

Experiment: Mixed culture, Halobacteriovorax-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture, Halobacteriovorax-1
3,839,819	+		ECD_03644	0.74	+0.4
3,839,820	-		ECD_03644	0.74	-0.6
3,839,822	+		ECD_03644	0.74	-0.4
3,839,823	-		ECD_03644	0.75	+1.1
3,839,823	-		ECD_03644	0.75	+0.0
3,839,893	-		ECD_03644	0.79	+0.8
3,839,900	-		ECD_03644	0.80	-0.4
3,839,907	+		ECD_03644	0.80	-0.2
3,839,908	-		ECD_03644	0.80	+0.0
3,839,908	-		ECD_03644	0.80	-0.2
3,839,912	+		ECD_03644	0.80	+0.1
3,839,912	+		ECD_03644	0.80	-0.2
3,839,961	+		ECD_03644	0.84	+0.3
3,839,961	+		ECD_03644	0.84	-0.4
3,839,962	-		ECD_03644	0.84	+0.0
3,839,962	-		ECD_03644	0.84	-0.4
3,839,962	-		ECD_03644	0.84	+0.3
3,839,962	-		ECD_03644	0.84	-0.0
3,840,032	-		ECD_03644	0.88	+0.0
3,840,131	+				-0.0
3,840,137	+				+0.2
3,840,137	+				+1.0
3,840,138	-				-0.1
3,840,138	-				-0.2
3,840,138	-				+0.4
3,840,138	-				-0.1
3,840,138	-				-0.2
3,840,141	+				-0.1
3,840,141	+				+0.5
3,840,141	+				-0.0
3,840,141	+				-0.5
3,840,142	-				+0.8
3,840,142	-				-0.1
3,840,142	-				-0.4
3,840,142	-				+0.0
3,840,169	-				+0.2
3,840,209	+				+0.5
3,840,210	-				+0.8
3,840,210	-				+0.5
3,840,210	-				-0.2
3,840,210	-				+0.2
3,840,210	-				+0.0
3,840,231	+				+0.3
3,840,232	-				+0.0
3,840,232	-				-0.6
3,840,239	+				+0.2
3,840,240	-				-0.1
3,840,245	-				+0.1
3,840,295	+				-0.5
3,840,370	+				-0.0
3,840,371	-				+0.1
3,840,512	+				+0.0
3,840,513	-				+0.0
3,840,517	+				-0.0
3,840,575	+		ECD_03645	0.13	-0.8
3,840,575	+		ECD_03645	0.13	-0.5
3,840,680	+				-1.2
3,840,681	-				+0.2
3,840,795	+				-0.2
3,840,795	+				+0.6
3,840,799	+				-0.3
3,840,799	+				+0.0
3,840,799	+				+0.5
3,840,822	+				-0.3
3,840,823	-				+0.1
3,840,823	-				-0.6
3,840,902	+				+0.1
3,840,902	+				+1.0
3,840,902	+				+0.1
3,840,903	-				-0.1
3,840,903	-				-0.5
3,840,903	-				-0.1
3,840,927	+				+1.0
3,840,928	-				-0.7
3,840,928	-				+0.1
3,840,928	-				+0.3
3,840,969	-		ECD_03646	0.10	+0.4
3,840,996	+		ECD_03646	0.12	-0.7
3,840,996	+		ECD_03646	0.12	-0.9
3,840,996	+		ECD_03646	0.12	-0.1
3,840,997	-		ECD_03646	0.12	-0.5
3,840,997	-		ECD_03646	0.12	+0.2
3,841,001	-		ECD_03646	0.12	-0.2
3,841,001	-		ECD_03646	0.12	+1.0
3,841,059	+		ECD_03646	0.16	+0.0
3,841,059	+		ECD_03646	0.16	+0.2
3,841,059	+		ECD_03646	0.16	-0.3
3,841,060	-		ECD_03646	0.16	-0.0
3,841,163	-		ECD_03646	0.22	+1.2
3,841,279	+		ECD_03646	0.29	-0.1
3,841,280	-		ECD_03646	0.29	-0.2
3,841,288	-		ECD_03646	0.30	+0.3
3,841,403	+		ECD_03646	0.37	+0.4
3,841,403	+		ECD_03646	0.37	+0.3
3,841,403	+		ECD_03646	0.37	-0.7
3,841,403	+		ECD_03646	0.37	-0.7
3,841,403	+		ECD_03646	0.37	-0.3
3,841,404	-		ECD_03646	0.37	+0.0
3,841,404	-		ECD_03646	0.37	+1.2
3,841,487	-		ECD_03646	0.42	+0.1
3,841,526	+		ECD_03646	0.44	+0.1
3,841,529	+		ECD_03646	0.44	-0.5
3,841,530	-		ECD_03646	0.44	-0.2
3,841,670	-		ECD_03646	0.53	-0.3
3,841,676	-		ECD_03646	0.53	+0.1
3,841,676	-		ECD_03646	0.53	-0.2
3,841,728	+		ECD_03646	0.56	-0.3
3,841,729	-		ECD_03646	0.56	-0.3
3,841,729	-		ECD_03646	0.56	-0.5
3,841,729	-		ECD_03646	0.56	-0.0
3,841,729	-		ECD_03646	0.56	+0.4
3,841,729	-		ECD_03646	0.56	-0.2
3,841,729	-		ECD_03646	0.56	-0.1
3,841,740	+		ECD_03646	0.57	-0.4
3,841,740	+		ECD_03646	0.57	-0.1
3,841,761	+		ECD_03646	0.58	-0.0
3,841,762	-		ECD_03646	0.58	-0.3
3,841,762	-		ECD_03646	0.58	+1.6
3,841,762	-		ECD_03646	0.58	-0.3
3,841,774	-		ECD_03646	0.59	-0.1
3,841,778	-		ECD_03646	0.59	-0.1
3,841,794	+		ECD_03646	0.60	-0.6
3,841,795	-		ECD_03646	0.60	+0.1
3,841,852	+		ECD_03646	0.64	-0.3
3,841,852	+		ECD_03646	0.64	+0.6
3,841,856	+		ECD_03646	0.64	+0.0
3,841,856	+		ECD_03646	0.64	+0.3
3,841,856	+		ECD_03646	0.64	+0.2
3,841,857	-		ECD_03646	0.64	-0.1
3,841,857	-		ECD_03646	0.64	+0.6
3,841,857	-		ECD_03646	0.64	+0.1
3,841,872	+		ECD_03646	0.65	-0.1
3,841,998	+		ECD_03646	0.73	+0.1
3,842,019	+		ECD_03646	0.74	+0.6
3,842,071	+		ECD_03646	0.77	-0.1
3,842,137	-		ECD_03646	0.81	+0.3
3,842,137	-		ECD_03646	0.81	+0.5
3,842,154	+		ECD_03646	0.82	+0.3
3,842,155	-		ECD_03646	0.82	-0.2
3,842,219	-		ECD_03646	0.86	-0.0
3,842,219	-		ECD_03646	0.86	-0.1
3,842,259	+		ECD_03646	0.89	+1.0
3,842,416	+				-0.3
3,842,416	+				-0.7
3,842,440	-				-1.2
3,842,465	+				-1.8
3,842,465	+				-0.0
3,842,466	-				-0.6
3,842,466	-				+0.2
3,842,466	-				+0.3
3,842,466	-				-0.5
3,842,492	+		ECD_03647	0.19	-0.1
3,842,493	-		ECD_03647	0.19	+0.2
3,842,547	+		ECD_03647	0.39	-0.3
3,842,548	-		ECD_03647	0.40	-0.5
3,842,575	-		ECD_03647	0.50	+0.3
3,842,576	+		ECD_03647	0.50	-0.4
3,842,577	-		ECD_03647	0.51	-0.7
3,842,619	-		ECD_03647	0.67	+0.1
3,842,619	-		ECD_03647	0.67	-0.9
3,842,633	+		ECD_03647	0.72	-0.2
3,842,633	+		ECD_03647	0.72	-0.1
3,842,634	-		ECD_03647	0.72	-0.8
3,842,637	+		ECD_03647	0.73	+0.1
3,842,638	-		ECD_03647	0.74	-0.3
3,842,720	-				-0.5
3,842,721	+				+0.8
3,842,747	+				-2.0
3,842,852	+		ECD_03648	0.14	-1.3
3,842,896	+		ECD_03648	0.18	-0.6
3,842,897	-		ECD_03648	0.18	-0.8
3,842,897	-		ECD_03648	0.18	-1.0
3,842,897	-		ECD_03648	0.18	-0.3
3,842,927	+		ECD_03648	0.22	-0.6
3,843,011	+		ECD_03648	0.31	-0.4
3,843,011	+		ECD_03648	0.31	-0.7
3,843,011	+		ECD_03648	0.31	-0.6
3,843,011	+		ECD_03648	0.31	-0.3
3,843,012	-		ECD_03648	0.31	-0.7
3,843,012	-		ECD_03648	0.31	-0.4
3,843,054	+		ECD_03648	0.35	-0.3
3,843,113	+		ECD_03648	0.42	-0.8
3,843,113	+		ECD_03648	0.42	-1.2
3,843,114	-		ECD_03648	0.42	-0.8
3,843,114	-		ECD_03648	0.42	-0.8
3,843,214	+		ECD_03648	0.52	-0.2
3,843,214	+		ECD_03648	0.52	-0.9
3,843,214	+		ECD_03648	0.52	-0.3
3,843,214	+		ECD_03648	0.52	-0.9
3,843,215	-		ECD_03648	0.53	-1.0
3,843,218	+		ECD_03648	0.53	-1.4
3,843,218	+		ECD_03648	0.53	-0.4
3,843,218	+		ECD_03648	0.53	-0.0
3,843,218	+		ECD_03648	0.53	-0.6
3,843,218	+		ECD_03648	0.53	-0.8
3,843,218	+		ECD_03648	0.53	-0.4
3,843,219	-		ECD_03648	0.53	-0.2
3,843,219	-		ECD_03648	0.53	-0.9
3,843,296	+		ECD_03648	0.61	-0.7
3,843,296	+		ECD_03648	0.61	-1.1
3,843,297	-		ECD_03648	0.61	-0.2
3,843,298	+		ECD_03648	0.62	+0.8
3,843,298	+		ECD_03648	0.62	-1.1
3,843,299	-		ECD_03648	0.62	-0.7
3,843,299	-		ECD_03648	0.62	+0.3
3,843,299	-		ECD_03648	0.62	-0.5
3,843,385	+		ECD_03648	0.71	-1.6
3,843,386	-		ECD_03648	0.71	-0.8