Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03352 and ECD_03353 are separated by 628 nucleotides ECD_03353 and ECD_03354 are separated by 247 nucleotides ECD_03354 and ECD_03355 are separated by 155 nucleotides
ECD_03352: ECD_03352 - arsenate reductase, at 3,512,623 to 3,513,048
_03352
ECD_03353: ECD_03353 - hypothetical protein, at 3,513,677 to 3,514,900
_03353
ECD_03354: ECD_03354 - outer membrane lipoprotein, at 3,515,148 to 3,515,714
_03354
ECD_03355: ECD_03355 - Putative LuxR family repressor for dicarboxylate transport, at 3,515,870 to 3,516,400
_03355
Position (kb)
3513
3514
3515 Strain fitness (log2 ratio)
-1
0
1 at 3512.803 kb on - strand, within ECD_03352 at 3512.818 kb on + strand, within ECD_03352 at 3512.819 kb on - strand, within ECD_03352 at 3513.156 kb on + strand at 3513.156 kb on + strand at 3513.159 kb on + strand at 3513.159 kb on + strand at 3513.210 kb on + strand at 3513.211 kb on - strand at 3513.259 kb on + strand at 3513.298 kb on - strand at 3513.298 kb on - strand at 3514.610 kb on + strand, within ECD_03353 at 3514.728 kb on - strand, within ECD_03353 at 3514.970 kb on + strand at 3515.288 kb on - strand, within ECD_03354 at 3515.289 kb on + strand, within ECD_03354 at 3515.289 kb on + strand, within ECD_03354 at 3515.289 kb on + strand, within ECD_03354 at 3515.289 kb on + strand, within ECD_03354 at 3515.289 kb on + strand, within ECD_03354 at 3515.359 kb on + strand, within ECD_03354 at 3515.371 kb on + strand, within ECD_03354 at 3515.372 kb on - strand, within ECD_03354 at 3515.385 kb on - strand, within ECD_03354 at 3515.389 kb on - strand, within ECD_03354 at 3515.402 kb on + strand, within ECD_03354 at 3515.416 kb on - strand, within ECD_03354 at 3515.416 kb on - strand, within ECD_03354 at 3515.523 kb on - strand, within ECD_03354 at 3515.528 kb on + strand, within ECD_03354 at 3515.538 kb on + strand, within ECD_03354 at 3515.539 kb on - strand, within ECD_03354 at 3515.540 kb on + strand, within ECD_03354 at 3515.540 kb on + strand, within ECD_03354 at 3515.540 kb on + strand, within ECD_03354 at 3515.558 kb on + strand, within ECD_03354 at 3515.607 kb on + strand, within ECD_03354 at 3515.607 kb on + strand, within ECD_03354 at 3515.607 kb on + strand, within ECD_03354 at 3515.608 kb on - strand, within ECD_03354 at 3515.671 kb on - strand at 3515.775 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 3,512,803 - ECD_03352 0.42 +0.5 3,512,818 + ECD_03352 0.46 -0.9 3,512,819 - ECD_03352 0.46 +0.1 3,513,156 + +0.5 3,513,156 + +0.3 3,513,159 + +0.0 3,513,159 + +0.0 3,513,210 + -0.1 3,513,211 - -0.2 3,513,259 + +0.3 3,513,298 - -0.9 3,513,298 - -0.3 3,514,610 + ECD_03353 0.76 -0.4 3,514,728 - ECD_03353 0.86 -0.7 3,514,970 + +0.8 3,515,288 - ECD_03354 0.25 +0.6 3,515,289 + ECD_03354 0.25 +0.9 3,515,289 + ECD_03354 0.25 +0.4 3,515,289 + ECD_03354 0.25 -0.0 3,515,289 + ECD_03354 0.25 +0.1 3,515,289 + ECD_03354 0.25 +0.5 3,515,359 + ECD_03354 0.37 -0.9 3,515,371 + ECD_03354 0.39 -0.4 3,515,372 - ECD_03354 0.40 -0.1 3,515,385 - ECD_03354 0.42 +0.4 3,515,389 - ECD_03354 0.43 +0.1 3,515,402 + ECD_03354 0.45 +0.0 3,515,416 - ECD_03354 0.47 -0.0 3,515,416 - ECD_03354 0.47 +0.7 3,515,523 - ECD_03354 0.66 +1.1 3,515,528 + ECD_03354 0.67 -0.3 3,515,538 + ECD_03354 0.69 +0.4 3,515,539 - ECD_03354 0.69 +0.1 3,515,540 + ECD_03354 0.69 -0.0 3,515,540 + ECD_03354 0.69 +0.0 3,515,540 + ECD_03354 0.69 +0.6 3,515,558 + ECD_03354 0.72 +0.5 3,515,607 + ECD_03354 0.81 -0.5 3,515,607 + ECD_03354 0.81 -0.0 3,515,607 + ECD_03354 0.81 +0.4 3,515,608 - ECD_03354 0.81 +0.1 3,515,671 - -0.1 3,515,775 - +0.5
Or see this region's nucleotide sequence