Strain Fitness in Escherichia coli BL21 around ECD_03339
Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Mixed culture, Halobacteriovorax-1 |
---|---|---|---|---|---|
remove | |||||
3,494,243 | + | ECD_03338 | 0.55 | +0.5 | |
3,494,390 | - | ECD_03338 | 0.64 | -0.2 | |
3,494,843 | - | -0.1 | |||
3,495,009 | + | -0.2 | |||
3,495,437 | - | ECD_03339 | 0.12 | +0.0 | |
3,495,955 | + | ECD_03339 | 0.45 | -0.7 | |
3,496,176 | - | ECD_03339 | 0.58 | -0.4 | |
3,496,273 | + | ECD_03339 | 0.64 | -0.3 | |
3,496,531 | + | ECD_03339 | 0.81 | +0.4 | |
3,497,571 | - | ECD_03340 | 0.33 | +0.4 | |
3,497,677 | - | ECD_03340 | 0.43 | -0.6 | |
3,497,677 | - | ECD_03340 | 0.43 | +0.9 | |
3,497,747 | + | ECD_03340 | 0.49 | +0.8 | |
3,497,759 | - | ECD_03340 | 0.51 | -0.1 | |
3,497,759 | - | ECD_03340 | 0.51 | -0.9 | |
3,497,759 | - | ECD_03340 | 0.51 | +0.2 | |
3,497,763 | - | ECD_03340 | 0.51 | +0.3 | |
3,497,774 | - | ECD_03340 | 0.52 | -0.2 | |
3,497,784 | + | ECD_03340 | 0.53 | -0.1 | |
3,497,801 | - | ECD_03340 | 0.55 | +1.0 | |
3,497,833 | + | ECD_03340 | 0.58 | -0.2 |
Or see this region's nucleotide sequence