Strain Fitness in Escherichia coli BL21 around ECD_03339

Experiment: Mixed culture, Halobacteriovorax-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03338 and ECD_03339 are separated by 261 nucleotidesECD_03339 and ECD_03340 are separated by 382 nucleotides ECD_03338: ECD_03338 - DUF4049 family protein, at 3,493,352 to 3,494,974 _03338 ECD_03339: ECD_03339 - hypothetical protein, at 3,495,236 to 3,496,843 _03339 ECD_03340: ECD_03340 - acid resistance protein, inner membrane, at 3,497,226 to 3,498,278 _03340 Position (kb) 3495 3496 3497Strain fitness (log2 ratio) -1 0 1at 3494.243 kb on + strand, within ECD_03338at 3494.390 kb on - strand, within ECD_03338at 3494.843 kb on - strandat 3495.009 kb on + strandat 3495.437 kb on - strand, within ECD_03339at 3495.955 kb on + strand, within ECD_03339at 3496.176 kb on - strand, within ECD_03339at 3496.273 kb on + strand, within ECD_03339at 3496.531 kb on + strand, within ECD_03339at 3497.571 kb on - strand, within ECD_03340at 3497.677 kb on - strand, within ECD_03340at 3497.677 kb on - strand, within ECD_03340at 3497.747 kb on + strand, within ECD_03340at 3497.759 kb on - strand, within ECD_03340at 3497.759 kb on - strand, within ECD_03340at 3497.759 kb on - strand, within ECD_03340at 3497.763 kb on - strand, within ECD_03340at 3497.774 kb on - strand, within ECD_03340at 3497.784 kb on + strand, within ECD_03340at 3497.801 kb on - strand, within ECD_03340at 3497.833 kb on + strand, within ECD_03340

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1
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3,494,243 + ECD_03338 0.55 +0.5
3,494,390 - ECD_03338 0.64 -0.2
3,494,843 - -0.1
3,495,009 + -0.2
3,495,437 - ECD_03339 0.12 +0.0
3,495,955 + ECD_03339 0.45 -0.7
3,496,176 - ECD_03339 0.58 -0.4
3,496,273 + ECD_03339 0.64 -0.3
3,496,531 + ECD_03339 0.81 +0.4
3,497,571 - ECD_03340 0.33 +0.4
3,497,677 - ECD_03340 0.43 -0.6
3,497,677 - ECD_03340 0.43 +0.9
3,497,747 + ECD_03340 0.49 +0.8
3,497,759 - ECD_03340 0.51 -0.1
3,497,759 - ECD_03340 0.51 -0.9
3,497,759 - ECD_03340 0.51 +0.2
3,497,763 - ECD_03340 0.51 +0.3
3,497,774 - ECD_03340 0.52 -0.2
3,497,784 + ECD_03340 0.53 -0.1
3,497,801 - ECD_03340 0.55 +1.0
3,497,833 + ECD_03340 0.58 -0.2

Or see this region's nucleotide sequence