Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02797 and ECD_02798 are separated by 79 nucleotides ECD_02798 and ECD_02811 are separated by 464 nucleotides
ECD_02797: ECD_02797 - integrase, at 2,941,476 to 2,942,360
_02797
ECD_02798: ECD_02798 - hypothetical protein, at 2,942,440 to 2,943,342
_02798
ECD_02811: ECD_02811 - hypothetical protein, at 2,943,807 to 2,944,376
_02811
Position (kb)
2942
2943
2944 Strain fitness (log2 ratio)
-2
-1
0
1 at 2941.453 kb on - strand at 2941.490 kb on - strand at 2941.490 kb on - strand at 2941.500 kb on - strand at 2941.530 kb on - strand at 2941.566 kb on + strand, within ECD_02797 at 2941.700 kb on + strand, within ECD_02797 at 2941.700 kb on + strand, within ECD_02797 at 2941.701 kb on - strand, within ECD_02797 at 2941.912 kb on + strand, within ECD_02797 at 2941.913 kb on - strand, within ECD_02797 at 2941.920 kb on + strand, within ECD_02797 at 2941.927 kb on + strand, within ECD_02797 at 2941.928 kb on - strand, within ECD_02797 at 2941.947 kb on + strand, within ECD_02797 at 2941.948 kb on - strand, within ECD_02797 at 2941.948 kb on - strand, within ECD_02797 at 2941.948 kb on - strand, within ECD_02797 at 2942.055 kb on + strand, within ECD_02797 at 2942.056 kb on - strand, within ECD_02797 at 2942.056 kb on - strand, within ECD_02797 at 2942.058 kb on - strand, within ECD_02797 at 2942.058 kb on - strand, within ECD_02797 at 2942.058 kb on - strand, within ECD_02797 at 2942.088 kb on - strand, within ECD_02797 at 2942.174 kb on + strand, within ECD_02797 at 2942.349 kb on - strand at 2942.523 kb on + strand at 2942.550 kb on + strand, within ECD_02798 at 2942.550 kb on + strand, within ECD_02798 at 2942.557 kb on + strand, within ECD_02798 at 2942.557 kb on + strand, within ECD_02798 at 2942.557 kb on + strand, within ECD_02798 at 2942.558 kb on - strand, within ECD_02798 at 2942.705 kb on + strand, within ECD_02798 at 2943.201 kb on + strand, within ECD_02798 at 2943.318 kb on + strand at 2943.352 kb on + strand at 2943.352 kb on + strand at 2943.352 kb on + strand at 2943.352 kb on + strand at 2943.353 kb on - strand at 2943.354 kb on + strand at 2943.354 kb on + strand at 2943.354 kb on + strand at 2943.420 kb on + strand at 2943.421 kb on - strand at 2943.426 kb on + strand at 2943.426 kb on + strand at 2943.427 kb on - strand at 2943.427 kb on - strand at 2943.546 kb on - strand at 2943.593 kb on + strand at 2943.807 kb on - strand at 2943.807 kb on - strand at 2943.807 kb on - strand at 2943.861 kb on - strand at 2943.898 kb on - strand, within ECD_02811 at 2944.219 kb on + strand, within ECD_02811 at 2944.219 kb on + strand, within ECD_02811 at 2944.219 kb on + strand, within ECD_02811 at 2944.220 kb on - strand, within ECD_02811 at 2944.220 kb on - strand, within ECD_02811 at 2944.220 kb on - strand, within ECD_02811 at 2944.220 kb on - strand, within ECD_02811 at 2944.268 kb on + strand, within ECD_02811 at 2944.272 kb on + strand, within ECD_02811 at 2944.272 kb on + strand, within ECD_02811 at 2944.273 kb on - strand, within ECD_02811 at 2944.331 kb on + strand at 2944.339 kb on + strand at 2944.340 kb on - strand at 2944.340 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 2,941,453 - +0.6 2,941,490 - -0.4 2,941,490 - -0.2 2,941,500 - +0.2 2,941,530 - +0.2 2,941,566 + ECD_02797 0.10 -0.7 2,941,700 + ECD_02797 0.25 +0.0 2,941,700 + ECD_02797 0.25 +0.4 2,941,701 - ECD_02797 0.25 +0.9 2,941,912 + ECD_02797 0.49 +0.2 2,941,913 - ECD_02797 0.49 +0.7 2,941,920 + ECD_02797 0.50 +0.4 2,941,927 + ECD_02797 0.51 -0.9 2,941,928 - ECD_02797 0.51 +0.2 2,941,947 + ECD_02797 0.53 +0.2 2,941,948 - ECD_02797 0.53 +1.0 2,941,948 - ECD_02797 0.53 -0.0 2,941,948 - ECD_02797 0.53 -0.3 2,942,055 + ECD_02797 0.65 -0.8 2,942,056 - ECD_02797 0.66 -0.2 2,942,056 - ECD_02797 0.66 +0.2 2,942,058 - ECD_02797 0.66 +0.7 2,942,058 - ECD_02797 0.66 +0.2 2,942,058 - ECD_02797 0.66 -0.1 2,942,088 - ECD_02797 0.69 -0.1 2,942,174 + ECD_02797 0.79 +0.1 2,942,349 - -0.4 2,942,523 + +0.3 2,942,550 + ECD_02798 0.12 +0.1 2,942,550 + ECD_02798 0.12 +0.6 2,942,557 + ECD_02798 0.13 +0.1 2,942,557 + ECD_02798 0.13 +0.3 2,942,557 + ECD_02798 0.13 +0.7 2,942,558 - ECD_02798 0.13 +0.2 2,942,705 + ECD_02798 0.29 +0.4 2,943,201 + ECD_02798 0.84 +0.6 2,943,318 + +0.2 2,943,352 + +0.3 2,943,352 + -0.5 2,943,352 + -0.0 2,943,352 + -0.5 2,943,353 - -0.3 2,943,354 + +0.8 2,943,354 + +0.4 2,943,354 + -0.9 2,943,420 + -2.7 2,943,421 - +0.3 2,943,426 + +0.1 2,943,426 + +0.3 2,943,427 - +0.1 2,943,427 - +0.6 2,943,546 - +0.1 2,943,593 + +0.1 2,943,807 - +0.3 2,943,807 - +0.0 2,943,807 - -0.0 2,943,861 - -0.1 2,943,898 - ECD_02811 0.16 -0.2 2,944,219 + ECD_02811 0.72 +0.7 2,944,219 + ECD_02811 0.72 -0.2 2,944,219 + ECD_02811 0.72 +1.1 2,944,220 - ECD_02811 0.72 +0.2 2,944,220 - ECD_02811 0.72 -1.0 2,944,220 - ECD_02811 0.72 +0.1 2,944,220 - ECD_02811 0.72 -0.6 2,944,268 + ECD_02811 0.81 +0.7 2,944,272 + ECD_02811 0.82 +0.5 2,944,272 + ECD_02811 0.82 -0.1 2,944,273 - ECD_02811 0.82 +0.4 2,944,331 + +0.4 2,944,339 + +0.7 2,944,340 - +0.1 2,944,340 - -0.2
Or see this region's nucleotide sequence