Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02383 and ECD_02384 are separated by 21 nucleotides ECD_02384 and ECD_02385 are separated by 37 nucleotides
ECD_02383: ECD_02383 - hydrogenase-4 transcriptional activator, at 2,476,381 to 2,478,393
_02383
ECD_02384: ECD_02384 - putative formate transporter, at 2,478,415 to 2,479,263
_02384
ECD_02385: ECD_02385 - putative UPF0118 family inner membrane permease, at 2,479,301 to 2,480,362
_02385
Position (kb)
2478
2479
2480 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2477.421 kb on + strand, within ECD_02383 at 2477.421 kb on + strand, within ECD_02383 at 2477.422 kb on - strand, within ECD_02383 at 2477.422 kb on - strand, within ECD_02383 at 2477.425 kb on + strand, within ECD_02383 at 2477.425 kb on + strand, within ECD_02383 at 2477.450 kb on + strand, within ECD_02383 at 2477.462 kb on + strand, within ECD_02383 at 2477.462 kb on + strand, within ECD_02383 at 2477.466 kb on + strand, within ECD_02383 at 2477.487 kb on + strand, within ECD_02383 at 2477.488 kb on - strand, within ECD_02383 at 2477.553 kb on + strand, within ECD_02383 at 2477.766 kb on - strand, within ECD_02383 at 2478.269 kb on + strand at 2478.392 kb on - strand at 2478.410 kb on + strand at 2478.410 kb on + strand at 2478.410 kb on + strand at 2478.410 kb on + strand at 2478.410 kb on + strand at 2478.411 kb on - strand at 2478.411 kb on - strand at 2478.411 kb on - strand at 2478.726 kb on + strand, within ECD_02384 at 2478.726 kb on + strand, within ECD_02384 at 2479.161 kb on + strand, within ECD_02384 at 2479.225 kb on - strand at 2479.243 kb on + strand at 2479.243 kb on + strand at 2479.244 kb on - strand at 2479.244 kb on - strand at 2479.244 kb on - strand at 2479.247 kb on + strand at 2479.247 kb on + strand at 2479.313 kb on + strand at 2479.427 kb on - strand, within ECD_02385 at 2479.475 kb on + strand, within ECD_02385 at 2479.603 kb on - strand, within ECD_02385 at 2479.870 kb on - strand, within ECD_02385 at 2479.975 kb on + strand, within ECD_02385 at 2480.067 kb on - strand, within ECD_02385 at 2480.070 kb on + strand, within ECD_02385 at 2480.071 kb on - strand, within ECD_02385 at 2480.071 kb on - strand, within ECD_02385 at 2480.123 kb on + strand, within ECD_02385 at 2480.123 kb on + strand, within ECD_02385 at 2480.123 kb on + strand, within ECD_02385 at 2480.124 kb on - strand, within ECD_02385 at 2480.124 kb on - strand, within ECD_02385 at 2480.124 kb on - strand, within ECD_02385 at 2480.125 kb on + strand, within ECD_02385 at 2480.126 kb on - strand, within ECD_02385 at 2480.126 kb on - strand, within ECD_02385 at 2480.144 kb on + strand, within ECD_02385 at 2480.179 kb on + strand, within ECD_02385
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 2,477,421 + ECD_02383 0.52 +0.1 2,477,421 + ECD_02383 0.52 -0.6 2,477,422 - ECD_02383 0.52 -0.2 2,477,422 - ECD_02383 0.52 +0.9 2,477,425 + ECD_02383 0.52 -0.0 2,477,425 + ECD_02383 0.52 +0.0 2,477,450 + ECD_02383 0.53 +0.2 2,477,462 + ECD_02383 0.54 -0.8 2,477,462 + ECD_02383 0.54 -0.0 2,477,466 + ECD_02383 0.54 +0.5 2,477,487 + ECD_02383 0.55 +0.6 2,477,488 - ECD_02383 0.55 +0.1 2,477,553 + ECD_02383 0.58 +0.2 2,477,766 - ECD_02383 0.69 +0.5 2,478,269 + +0.6 2,478,392 - +0.1 2,478,410 + +0.4 2,478,410 + -0.6 2,478,410 + -0.8 2,478,410 + +0.6 2,478,410 + +0.5 2,478,411 - +0.9 2,478,411 - +0.3 2,478,411 - +0.0 2,478,726 + ECD_02384 0.37 +0.1 2,478,726 + ECD_02384 0.37 -0.4 2,479,161 + ECD_02384 0.88 -0.1 2,479,225 - +0.1 2,479,243 + +0.6 2,479,243 + -0.5 2,479,244 - -0.2 2,479,244 - +0.4 2,479,244 - +0.4 2,479,247 + -0.1 2,479,247 + -0.0 2,479,313 + -1.5 2,479,427 - ECD_02385 0.12 -0.4 2,479,475 + ECD_02385 0.16 -1.0 2,479,603 - ECD_02385 0.28 +1.1 2,479,870 - ECD_02385 0.54 -1.3 2,479,975 + ECD_02385 0.63 +0.2 2,480,067 - ECD_02385 0.72 -0.4 2,480,070 + ECD_02385 0.72 +0.0 2,480,071 - ECD_02385 0.73 +1.3 2,480,071 - ECD_02385 0.73 +1.1 2,480,123 + ECD_02385 0.77 -0.1 2,480,123 + ECD_02385 0.77 -0.3 2,480,123 + ECD_02385 0.77 -0.5 2,480,124 - ECD_02385 0.77 -0.1 2,480,124 - ECD_02385 0.77 +0.2 2,480,124 - ECD_02385 0.77 +0.1 2,480,125 + ECD_02385 0.78 +2.9 2,480,126 - ECD_02385 0.78 +2.1 2,480,126 - ECD_02385 0.78 -0.4 2,480,144 + ECD_02385 0.79 +0.6 2,480,179 + ECD_02385 0.83 +0.3
Or see this region's nucleotide sequence