Strain Fitness in Escherichia coli BL21 around ECD_02334
Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Mixed culture, Halobacteriovorax-1 |
---|---|---|---|---|---|
remove | |||||
2,422,179 | - | ECD_02332 | 0.88 | +0.4 | |
2,422,179 | - | ECD_02332 | 0.88 | +1.2 | |
2,422,228 | - | +0.3 | |||
2,422,228 | - | +0.9 | |||
2,422,274 | - | +0.3 | |||
2,422,382 | - | -0.3 | |||
2,422,632 | + | ECD_02333 | 0.39 | +0.2 | |
2,422,638 | - | ECD_02333 | 0.40 | -0.1 | |
2,422,638 | - | ECD_02333 | 0.40 | -0.2 | |
2,422,826 | + | ECD_02333 | 0.82 | -0.2 | |
2,422,827 | - | ECD_02333 | 0.82 | +0.7 | |
2,422,966 | + | ECD_02334 | 0.17 | -0.6 | |
2,423,107 | + | ECD_02334 | 0.50 | -0.4 | |
2,423,108 | - | ECD_02334 | 0.50 | -0.4 | |
2,423,108 | - | ECD_02334 | 0.50 | +0.3 | |
2,423,108 | - | ECD_02334 | 0.50 | +0.1 | |
2,423,210 | + | ECD_02334 | 0.74 | -0.6 | |
2,423,211 | - | ECD_02334 | 0.75 | -0.8 | |
2,423,311 | - | +1.2 | |||
2,423,322 | - | +0.4 | |||
2,423,496 | + | -0.0 | |||
2,423,518 | - | +0.6 | |||
2,423,552 | - | -0.6 | |||
2,423,897 | + | ECD_02335 | 0.42 | +0.8 | |
2,423,999 | + | ECD_02335 | 0.54 | -0.8 | |
2,424,015 | + | ECD_02335 | 0.56 | -0.2 | |
2,424,015 | + | ECD_02335 | 0.56 | +0.2 | |
2,424,015 | + | ECD_02335 | 0.56 | +0.2 | |
2,424,126 | - | ECD_02335 | 0.68 | -1.3 | |
2,424,296 | - | ECD_02335 | 0.88 | -0.3 |
Or see this region's nucleotide sequence