Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02266 and ECD_02267 are separated by 180 nucleotides ECD_02267 and ECD_02268 are separated by 371 nucleotides
ECD_02266: ECD_02266 - beta-ketoacyl-CoA thiolase, anaerobic, subunit, at 2,346,484 to 2,347,794
_02266
ECD_02267: ECD_02267 - UPF0381 family protein, at 2,347,975 to 2,348,259
_02267
ECD_02268: ECD_02268 - long-chain fatty acid outer membrane transporter, at 2,348,631 to 2,349,971
_02268
Position (kb)
2347
2348
2349 Strain fitness (log2 ratio)
-1
0
1 at 2347.092 kb on + strand, within ECD_02266 at 2347.092 kb on + strand, within ECD_02266 at 2347.092 kb on + strand, within ECD_02266 at 2347.092 kb on + strand, within ECD_02266 at 2347.092 kb on + strand, within ECD_02266 at 2347.093 kb on - strand, within ECD_02266 at 2347.094 kb on + strand, within ECD_02266 at 2347.181 kb on - strand, within ECD_02266 at 2347.211 kb on + strand, within ECD_02266 at 2347.212 kb on - strand, within ECD_02266 at 2347.341 kb on + strand, within ECD_02266 at 2347.518 kb on - strand, within ECD_02266 at 2347.532 kb on - strand, within ECD_02266 at 2347.532 kb on - strand, within ECD_02266 at 2347.532 kb on - strand, within ECD_02266 at 2347.958 kb on + strand at 2348.218 kb on - strand, within ECD_02267 at 2348.311 kb on - strand at 2348.468 kb on + strand at 2348.544 kb on + strand at 2348.544 kb on + strand at 2348.551 kb on + strand at 2348.591 kb on - strand at 2348.596 kb on - strand at 2348.651 kb on + strand at 2348.684 kb on + strand at 2348.754 kb on + strand at 2348.820 kb on - strand, within ECD_02268 at 2348.856 kb on + strand, within ECD_02268 at 2348.857 kb on - strand, within ECD_02268 at 2348.858 kb on + strand, within ECD_02268 at 2348.859 kb on - strand, within ECD_02268 at 2348.872 kb on + strand, within ECD_02268 at 2348.873 kb on - strand, within ECD_02268 at 2348.996 kb on + strand, within ECD_02268 at 2348.996 kb on + strand, within ECD_02268 at 2348.999 kb on + strand, within ECD_02268 at 2349.009 kb on + strand, within ECD_02268 at 2349.009 kb on + strand, within ECD_02268 at 2349.009 kb on + strand, within ECD_02268 at 2349.010 kb on - strand, within ECD_02268 at 2349.010 kb on - strand, within ECD_02268 at 2349.020 kb on + strand, within ECD_02268 at 2349.036 kb on - strand, within ECD_02268 at 2349.036 kb on - strand, within ECD_02268 at 2349.039 kb on + strand, within ECD_02268 at 2349.039 kb on + strand, within ECD_02268 at 2349.040 kb on - strand, within ECD_02268 at 2349.040 kb on - strand, within ECD_02268 at 2349.094 kb on + strand, within ECD_02268 at 2349.113 kb on - strand, within ECD_02268 at 2349.216 kb on - strand, within ECD_02268
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 2,347,092 + ECD_02266 0.46 -1.1 2,347,092 + ECD_02266 0.46 +0.0 2,347,092 + ECD_02266 0.46 -0.1 2,347,092 + ECD_02266 0.46 -0.5 2,347,092 + ECD_02266 0.46 +0.8 2,347,093 - ECD_02266 0.46 +0.6 2,347,094 + ECD_02266 0.47 -0.4 2,347,181 - ECD_02266 0.53 +0.2 2,347,211 + ECD_02266 0.55 -0.2 2,347,212 - ECD_02266 0.56 -0.6 2,347,341 + ECD_02266 0.65 +1.7 2,347,518 - ECD_02266 0.79 -0.3 2,347,532 - ECD_02266 0.80 +0.0 2,347,532 - ECD_02266 0.80 +0.6 2,347,532 - ECD_02266 0.80 -0.2 2,347,958 + +0.0 2,348,218 - ECD_02267 0.85 -0.3 2,348,311 - -0.3 2,348,468 + +0.4 2,348,544 + +0.5 2,348,544 + -0.1 2,348,551 + +0.3 2,348,591 - +0.9 2,348,596 - -0.1 2,348,651 + +0.3 2,348,684 + +0.5 2,348,754 + +0.2 2,348,820 - ECD_02268 0.14 +0.2 2,348,856 + ECD_02268 0.17 +0.5 2,348,857 - ECD_02268 0.17 -1.0 2,348,858 + ECD_02268 0.17 -0.3 2,348,859 - ECD_02268 0.17 +0.7 2,348,872 + ECD_02268 0.18 -0.2 2,348,873 - ECD_02268 0.18 -0.1 2,348,996 + ECD_02268 0.27 +0.6 2,348,996 + ECD_02268 0.27 +0.3 2,348,999 + ECD_02268 0.27 -0.1 2,349,009 + ECD_02268 0.28 +0.6 2,349,009 + ECD_02268 0.28 +0.5 2,349,009 + ECD_02268 0.28 +1.1 2,349,010 - ECD_02268 0.28 -1.1 2,349,010 - ECD_02268 0.28 -0.2 2,349,020 + ECD_02268 0.29 -0.1 2,349,036 - ECD_02268 0.30 +0.3 2,349,036 - ECD_02268 0.30 +1.0 2,349,039 + ECD_02268 0.30 -0.2 2,349,039 + ECD_02268 0.30 -0.9 2,349,040 - ECD_02268 0.30 +0.6 2,349,040 - ECD_02268 0.30 +0.6 2,349,094 + ECD_02268 0.35 +0.3 2,349,113 - ECD_02268 0.36 +0.2 2,349,216 - ECD_02268 0.44 +0.5
Or see this region's nucleotide sequence