Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02230 and ECD_02231 are separated by 196 nucleotides ECD_02231 and ECD_02232 are separated by 7 nucleotides ECD_02232 and ECD_02233 overlap by 4 nucleotides ECD_02233 and ECD_02234 are separated by 89 nucleotides
ECD_02230: ECD_02230 - transposase_31 family protein, at 2,309,902 to 2,310,792
_02230
ECD_02231: ECD_02231 - histidine ABC transporter ATPase, at 2,310,989 to 2,311,762
_02231
ECD_02232: ECD_02232 - histidine ABC transporter permease, at 2,311,770 to 2,312,486
_02232
ECD_02233: ECD_02233 - histidine ABC transporter permease, at 2,312,483 to 2,313,169
_02233
ECD_02234: ECD_02234 - histidine ABC transporter periplasmic binding protein, at 2,313,259 to 2,314,041
_02234
Position (kb)
2311
2312
2313 Strain fitness (log2 ratio)
-1
0
1
2 at 2310.991 kb on - strand at 2311.106 kb on - strand, within ECD_02231 at 2311.184 kb on - strand, within ECD_02231 at 2311.445 kb on - strand, within ECD_02231 at 2311.445 kb on - strand, within ECD_02231 at 2311.665 kb on - strand, within ECD_02231 at 2311.665 kb on - strand, within ECD_02231 at 2311.746 kb on - strand at 2311.746 kb on - strand at 2311.843 kb on + strand, within ECD_02232 at 2311.843 kb on + strand, within ECD_02232 at 2311.843 kb on + strand, within ECD_02232 at 2311.844 kb on - strand, within ECD_02232 at 2311.844 kb on - strand, within ECD_02232 at 2311.854 kb on + strand, within ECD_02232 at 2311.898 kb on - strand, within ECD_02232 at 2312.000 kb on - strand, within ECD_02232 at 2312.016 kb on - strand, within ECD_02232 at 2312.239 kb on + strand, within ECD_02232 at 2312.273 kb on - strand, within ECD_02232 at 2312.273 kb on - strand, within ECD_02232 at 2312.301 kb on - strand, within ECD_02232 at 2312.800 kb on + strand, within ECD_02233 at 2312.801 kb on - strand, within ECD_02233 at 2312.801 kb on - strand, within ECD_02233 at 2312.801 kb on - strand, within ECD_02233 at 2312.801 kb on - strand, within ECD_02233 at 2312.801 kb on - strand, within ECD_02233 at 2312.851 kb on - strand, within ECD_02233 at 2312.859 kb on + strand, within ECD_02233 at 2312.860 kb on - strand, within ECD_02233 at 2312.864 kb on - strand, within ECD_02233 at 2312.878 kb on + strand, within ECD_02233 at 2312.985 kb on - strand, within ECD_02233 at 2312.985 kb on - strand, within ECD_02233 at 2313.099 kb on - strand, within ECD_02233 at 2313.270 kb on - strand at 2313.309 kb on - strand at 2313.309 kb on - strand at 2313.375 kb on + strand, within ECD_02234
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 2,310,991 - -0.3 2,311,106 - ECD_02231 0.15 +0.5 2,311,184 - ECD_02231 0.25 -0.2 2,311,445 - ECD_02231 0.59 +2.5 2,311,445 - ECD_02231 0.59 +0.4 2,311,665 - ECD_02231 0.87 +0.9 2,311,665 - ECD_02231 0.87 +0.8 2,311,746 - -0.1 2,311,746 - +0.6 2,311,843 + ECD_02232 0.10 +0.3 2,311,843 + ECD_02232 0.10 +0.2 2,311,843 + ECD_02232 0.10 +0.2 2,311,844 - ECD_02232 0.10 -0.4 2,311,844 - ECD_02232 0.10 -0.1 2,311,854 + ECD_02232 0.12 +0.5 2,311,898 - ECD_02232 0.18 +0.2 2,312,000 - ECD_02232 0.32 +0.6 2,312,016 - ECD_02232 0.34 +0.6 2,312,239 + ECD_02232 0.65 +1.2 2,312,273 - ECD_02232 0.70 +0.2 2,312,273 - ECD_02232 0.70 +0.1 2,312,301 - ECD_02232 0.74 +0.1 2,312,800 + ECD_02233 0.46 +0.7 2,312,801 - ECD_02233 0.46 +0.7 2,312,801 - ECD_02233 0.46 +0.3 2,312,801 - ECD_02233 0.46 +0.2 2,312,801 - ECD_02233 0.46 -0.6 2,312,801 - ECD_02233 0.46 -0.2 2,312,851 - ECD_02233 0.54 +0.8 2,312,859 + ECD_02233 0.55 +0.6 2,312,860 - ECD_02233 0.55 -0.4 2,312,864 - ECD_02233 0.55 +0.4 2,312,878 + ECD_02233 0.57 +0.1 2,312,985 - ECD_02233 0.73 +1.3 2,312,985 - ECD_02233 0.73 -0.1 2,313,099 - ECD_02233 0.90 +1.0 2,313,270 - +0.0 2,313,309 - +0.0 2,313,309 - -0.2 2,313,375 + ECD_02234 0.15 -1.0
Or see this region's nucleotide sequence