Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02157 and ECD_02158 are separated by 146 nucleotides ECD_02158 and ECD_02159 are separated by 127 nucleotides ECD_02159 and ECD_02160 are separated by 695 nucleotides
ECD_02157: ECD_02157 - DNA gyrase (type II topoisomerase), subunit A, at 2,227,154 to 2,229,781
_02157
ECD_02158: ECD_02158 - bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase, at 2,229,928 to 2,230,650
_02158
ECD_02159: ECD_02159 - adhesin, at 2,230,778 to 2,234,530
_02159
ECD_02160: ECD_02160 - ribonucleoside-diphosphate reductase 1, alpha subunit, at 2,235,226 to 2,237,511
_02160
Position (kb)
2230
2231
2232
2233
2234
2235 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2229.860 kb on - strand at 2229.860 kb on - strand at 2229.890 kb on + strand at 2231.128 kb on - strand at 2231.260 kb on + strand, within ECD_02159 at 2231.272 kb on - strand, within ECD_02159 at 2231.426 kb on + strand, within ECD_02159 at 2231.614 kb on + strand, within ECD_02159 at 2231.614 kb on + strand, within ECD_02159 at 2231.693 kb on - strand, within ECD_02159 at 2231.797 kb on - strand, within ECD_02159 at 2231.833 kb on - strand, within ECD_02159 at 2231.833 kb on - strand, within ECD_02159 at 2231.993 kb on - strand, within ECD_02159 at 2232.075 kb on + strand, within ECD_02159 at 2232.075 kb on + strand, within ECD_02159 at 2232.139 kb on + strand, within ECD_02159 at 2232.140 kb on - strand, within ECD_02159 at 2232.754 kb on - strand, within ECD_02159 at 2232.754 kb on - strand, within ECD_02159 at 2232.826 kb on - strand, within ECD_02159 at 2232.832 kb on + strand, within ECD_02159 at 2232.848 kb on + strand, within ECD_02159 at 2232.936 kb on - strand, within ECD_02159 at 2232.936 kb on - strand, within ECD_02159 at 2232.936 kb on - strand, within ECD_02159 at 2232.938 kb on + strand, within ECD_02159 at 2232.996 kb on + strand, within ECD_02159 at 2232.997 kb on - strand, within ECD_02159 at 2232.997 kb on - strand, within ECD_02159 at 2232.997 kb on - strand, within ECD_02159 at 2233.140 kb on - strand, within ECD_02159 at 2233.183 kb on - strand, within ECD_02159 at 2233.183 kb on - strand, within ECD_02159 at 2233.183 kb on - strand, within ECD_02159 at 2233.517 kb on - strand, within ECD_02159 at 2233.517 kb on - strand, within ECD_02159 at 2233.517 kb on - strand, within ECD_02159 at 2233.568 kb on - strand, within ECD_02159 at 2233.568 kb on - strand, within ECD_02159 at 2233.657 kb on - strand, within ECD_02159 at 2233.661 kb on - strand, within ECD_02159 at 2233.661 kb on - strand, within ECD_02159 at 2233.661 kb on - strand, within ECD_02159 at 2233.724 kb on + strand, within ECD_02159 at 2233.801 kb on - strand, within ECD_02159 at 2234.067 kb on - strand, within ECD_02159 at 2234.156 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 2,229,860 - +0.1 2,229,860 - +0.6 2,229,890 + -0.2 2,231,128 - +0.2 2,231,260 + ECD_02159 0.13 +0.1 2,231,272 - ECD_02159 0.13 -0.3 2,231,426 + ECD_02159 0.17 +0.3 2,231,614 + ECD_02159 0.22 +0.2 2,231,614 + ECD_02159 0.22 +0.2 2,231,693 - ECD_02159 0.24 -0.8 2,231,797 - ECD_02159 0.27 +0.0 2,231,833 - ECD_02159 0.28 -0.0 2,231,833 - ECD_02159 0.28 +0.7 2,231,993 - ECD_02159 0.32 +0.7 2,232,075 + ECD_02159 0.35 +0.3 2,232,075 + ECD_02159 0.35 +1.0 2,232,139 + ECD_02159 0.36 -0.5 2,232,140 - ECD_02159 0.36 -0.1 2,232,754 - ECD_02159 0.53 +2.1 2,232,754 - ECD_02159 0.53 -0.7 2,232,826 - ECD_02159 0.55 -0.2 2,232,832 + ECD_02159 0.55 -0.0 2,232,848 + ECD_02159 0.55 -0.3 2,232,936 - ECD_02159 0.58 -0.0 2,232,936 - ECD_02159 0.58 +0.9 2,232,936 - ECD_02159 0.58 -0.5 2,232,938 + ECD_02159 0.58 +0.9 2,232,996 + ECD_02159 0.59 -2.6 2,232,997 - ECD_02159 0.59 +0.5 2,232,997 - ECD_02159 0.59 +0.2 2,232,997 - ECD_02159 0.59 -0.6 2,233,140 - ECD_02159 0.63 -0.2 2,233,183 - ECD_02159 0.64 +1.1 2,233,183 - ECD_02159 0.64 +0.2 2,233,183 - ECD_02159 0.64 +0.5 2,233,517 - ECD_02159 0.73 +0.2 2,233,517 - ECD_02159 0.73 +0.1 2,233,517 - ECD_02159 0.73 +0.5 2,233,568 - ECD_02159 0.74 -0.0 2,233,568 - ECD_02159 0.74 +1.0 2,233,657 - ECD_02159 0.77 -0.4 2,233,661 - ECD_02159 0.77 +0.3 2,233,661 - ECD_02159 0.77 -0.6 2,233,661 - ECD_02159 0.77 +0.2 2,233,724 + ECD_02159 0.78 +0.5 2,233,801 - ECD_02159 0.81 +0.3 2,234,067 - ECD_02159 0.88 +0.7 2,234,156 - -0.4
Or see this region's nucleotide sequence