Strain Fitness in Escherichia coli BL21 around ECD_02159

Experiment: Mixed culture, Halobacteriovorax-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02157 and ECD_02158 are separated by 146 nucleotidesECD_02158 and ECD_02159 are separated by 127 nucleotidesECD_02159 and ECD_02160 are separated by 695 nucleotides ECD_02157: ECD_02157 - DNA gyrase (type II topoisomerase), subunit A, at 2,227,154 to 2,229,781 _02157 ECD_02158: ECD_02158 - bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase, at 2,229,928 to 2,230,650 _02158 ECD_02159: ECD_02159 - adhesin, at 2,230,778 to 2,234,530 _02159 ECD_02160: ECD_02160 - ribonucleoside-diphosphate reductase 1, alpha subunit, at 2,235,226 to 2,237,511 _02160 Position (kb) 2230 2231 2232 2233 2234 2235Strain fitness (log2 ratio) -2 -1 0 1 2at 2229.860 kb on - strandat 2229.860 kb on - strandat 2229.890 kb on + strandat 2231.128 kb on - strandat 2231.260 kb on + strand, within ECD_02159at 2231.272 kb on - strand, within ECD_02159at 2231.426 kb on + strand, within ECD_02159at 2231.614 kb on + strand, within ECD_02159at 2231.614 kb on + strand, within ECD_02159at 2231.693 kb on - strand, within ECD_02159at 2231.797 kb on - strand, within ECD_02159at 2231.833 kb on - strand, within ECD_02159at 2231.833 kb on - strand, within ECD_02159at 2231.993 kb on - strand, within ECD_02159at 2232.075 kb on + strand, within ECD_02159at 2232.075 kb on + strand, within ECD_02159at 2232.139 kb on + strand, within ECD_02159at 2232.140 kb on - strand, within ECD_02159at 2232.754 kb on - strand, within ECD_02159at 2232.754 kb on - strand, within ECD_02159at 2232.826 kb on - strand, within ECD_02159at 2232.832 kb on + strand, within ECD_02159at 2232.848 kb on + strand, within ECD_02159at 2232.936 kb on - strand, within ECD_02159at 2232.936 kb on - strand, within ECD_02159at 2232.936 kb on - strand, within ECD_02159at 2232.938 kb on + strand, within ECD_02159at 2232.996 kb on + strand, within ECD_02159at 2232.997 kb on - strand, within ECD_02159at 2232.997 kb on - strand, within ECD_02159at 2232.997 kb on - strand, within ECD_02159at 2233.140 kb on - strand, within ECD_02159at 2233.183 kb on - strand, within ECD_02159at 2233.183 kb on - strand, within ECD_02159at 2233.183 kb on - strand, within ECD_02159at 2233.517 kb on - strand, within ECD_02159at 2233.517 kb on - strand, within ECD_02159at 2233.517 kb on - strand, within ECD_02159at 2233.568 kb on - strand, within ECD_02159at 2233.568 kb on - strand, within ECD_02159at 2233.657 kb on - strand, within ECD_02159at 2233.661 kb on - strand, within ECD_02159at 2233.661 kb on - strand, within ECD_02159at 2233.661 kb on - strand, within ECD_02159at 2233.724 kb on + strand, within ECD_02159at 2233.801 kb on - strand, within ECD_02159at 2234.067 kb on - strand, within ECD_02159at 2234.156 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1
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2,229,860 - +0.1
2,229,860 - +0.6
2,229,890 + -0.2
2,231,128 - +0.2
2,231,260 + ECD_02159 0.13 +0.1
2,231,272 - ECD_02159 0.13 -0.3
2,231,426 + ECD_02159 0.17 +0.3
2,231,614 + ECD_02159 0.22 +0.2
2,231,614 + ECD_02159 0.22 +0.2
2,231,693 - ECD_02159 0.24 -0.8
2,231,797 - ECD_02159 0.27 +0.0
2,231,833 - ECD_02159 0.28 -0.0
2,231,833 - ECD_02159 0.28 +0.7
2,231,993 - ECD_02159 0.32 +0.7
2,232,075 + ECD_02159 0.35 +0.3
2,232,075 + ECD_02159 0.35 +1.0
2,232,139 + ECD_02159 0.36 -0.5
2,232,140 - ECD_02159 0.36 -0.1
2,232,754 - ECD_02159 0.53 +2.1
2,232,754 - ECD_02159 0.53 -0.7
2,232,826 - ECD_02159 0.55 -0.2
2,232,832 + ECD_02159 0.55 -0.0
2,232,848 + ECD_02159 0.55 -0.3
2,232,936 - ECD_02159 0.58 -0.0
2,232,936 - ECD_02159 0.58 +0.9
2,232,936 - ECD_02159 0.58 -0.5
2,232,938 + ECD_02159 0.58 +0.9
2,232,996 + ECD_02159 0.59 -2.6
2,232,997 - ECD_02159 0.59 +0.5
2,232,997 - ECD_02159 0.59 +0.2
2,232,997 - ECD_02159 0.59 -0.6
2,233,140 - ECD_02159 0.63 -0.2
2,233,183 - ECD_02159 0.64 +1.1
2,233,183 - ECD_02159 0.64 +0.2
2,233,183 - ECD_02159 0.64 +0.5
2,233,517 - ECD_02159 0.73 +0.2
2,233,517 - ECD_02159 0.73 +0.1
2,233,517 - ECD_02159 0.73 +0.5
2,233,568 - ECD_02159 0.74 -0.0
2,233,568 - ECD_02159 0.74 +1.0
2,233,657 - ECD_02159 0.77 -0.4
2,233,661 - ECD_02159 0.77 +0.3
2,233,661 - ECD_02159 0.77 -0.6
2,233,661 - ECD_02159 0.77 +0.2
2,233,724 + ECD_02159 0.78 +0.5
2,233,801 - ECD_02159 0.81 +0.3
2,234,067 - ECD_02159 0.88 +0.7
2,234,156 - -0.4

Or see this region's nucleotide sequence