Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02138 and ECD_02139 are separated by 75 nucleotides ECD_02139 and ECD_02140 overlap by 1 nucleotides ECD_02140 and ECD_02141 are separated by 73 nucleotides
ECD_02138: ECD_02138 - microcin J25 efflux ABC transporter permease/ATPase, at 2,200,737 to 2,202,380
_02138
ECD_02139: ECD_02139 - oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesions, at 2,202,456 to 2,203,106
_02139
ECD_02140: ECD_02140 - fused DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase, at 2,203,106 to 2,204,170
_02140
ECD_02141: ECD_02141 - putative thiamine-synthetic flavin transferase lipoprotein, at 2,204,244 to 2,205,299
_02141
Position (kb)
2203
2204
2205 Strain fitness (log2 ratio)
-1
0
1
2 at 2202.208 kb on - strand, within ECD_02138 at 2202.208 kb on - strand, within ECD_02138 at 2202.367 kb on - strand at 2202.657 kb on + strand, within ECD_02139 at 2202.941 kb on + strand, within ECD_02139 at 2202.941 kb on + strand, within ECD_02139 at 2202.941 kb on + strand, within ECD_02139 at 2202.941 kb on + strand, within ECD_02139 at 2202.942 kb on - strand, within ECD_02139 at 2202.942 kb on - strand, within ECD_02139 at 2202.942 kb on - strand, within ECD_02139 at 2202.942 kb on - strand, within ECD_02139 at 2202.942 kb on - strand, within ECD_02139 at 2202.942 kb on - strand, within ECD_02139 at 2202.942 kb on - strand, within ECD_02139 at 2202.942 kb on - strand, within ECD_02139 at 2202.942 kb on - strand, within ECD_02139 at 2202.942 kb on - strand, within ECD_02139 at 2202.942 kb on - strand, within ECD_02139 at 2202.942 kb on - strand, within ECD_02139 at 2202.996 kb on - strand, within ECD_02139 at 2203.214 kb on + strand, within ECD_02140 at 2203.215 kb on - strand, within ECD_02140 at 2203.215 kb on - strand, within ECD_02140 at 2203.674 kb on + strand, within ECD_02140 at 2203.823 kb on + strand, within ECD_02140 at 2204.150 kb on + strand at 2204.151 kb on - strand at 2204.151 kb on - strand at 2204.273 kb on + strand at 2204.297 kb on + strand at 2204.326 kb on + strand at 2204.519 kb on - strand, within ECD_02141 at 2204.523 kb on - strand, within ECD_02141 at 2204.643 kb on - strand, within ECD_02141 at 2204.762 kb on - strand, within ECD_02141 at 2204.763 kb on + strand, within ECD_02141 at 2204.789 kb on - strand, within ECD_02141 at 2204.934 kb on - strand, within ECD_02141 at 2204.934 kb on - strand, within ECD_02141
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 2,202,208 - ECD_02138 0.89 -0.2 2,202,208 - ECD_02138 0.89 -0.0 2,202,367 - +0.1 2,202,657 + ECD_02139 0.31 -0.2 2,202,941 + ECD_02139 0.75 -0.5 2,202,941 + ECD_02139 0.75 +0.1 2,202,941 + ECD_02139 0.75 +0.0 2,202,941 + ECD_02139 0.75 +0.2 2,202,942 - ECD_02139 0.75 -0.1 2,202,942 - ECD_02139 0.75 -0.6 2,202,942 - ECD_02139 0.75 +0.4 2,202,942 - ECD_02139 0.75 -0.4 2,202,942 - ECD_02139 0.75 -0.7 2,202,942 - ECD_02139 0.75 -0.2 2,202,942 - ECD_02139 0.75 -0.6 2,202,942 - ECD_02139 0.75 -0.0 2,202,942 - ECD_02139 0.75 +1.9 2,202,942 - ECD_02139 0.75 +0.1 2,202,942 - ECD_02139 0.75 +0.3 2,202,942 - ECD_02139 0.75 -0.1 2,202,996 - ECD_02139 0.83 -0.1 2,203,214 + ECD_02140 0.10 -0.5 2,203,215 - ECD_02140 0.10 +0.5 2,203,215 - ECD_02140 0.10 +0.2 2,203,674 + ECD_02140 0.53 -0.5 2,203,823 + ECD_02140 0.67 +1.4 2,204,150 + +0.3 2,204,151 - -0.5 2,204,151 - -0.2 2,204,273 + +0.1 2,204,297 + +1.4 2,204,326 + -1.5 2,204,519 - ECD_02141 0.26 -1.4 2,204,523 - ECD_02141 0.26 +1.2 2,204,643 - ECD_02141 0.38 -0.2 2,204,762 - ECD_02141 0.49 +0.1 2,204,763 + ECD_02141 0.49 +0.5 2,204,789 - ECD_02141 0.52 -0.1 2,204,934 - ECD_02141 0.65 -0.8 2,204,934 - ECD_02141 0.65 +0.6
Or see this region's nucleotide sequence