Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02070 and ECD_02071 overlap by 4 nucleotides ECD_02071 and ECD_02072 are separated by 129 nucleotides ECD_02072 and ECD_02073 are separated by 149 nucleotides ECD_02073 and ECD_02074 are separated by 2 nucleotides
ECD_02070: ECD_02070 - UPF0299 family inner membrane protein, at 2,125,528 to 2,125,926
_02070
ECD_02071: ECD_02071 - LrgB family inner membrane protein, at 2,125,923 to 2,126,618
_02071
ECD_02072: ECD_02072 - cytidine/deoxycytidine deaminase, at 2,126,748 to 2,127,632
_02072
ECD_02073: ECD_02073 - DUF218 superfamily vancomycin high temperature exclusion protein, at 2,127,782 to 2,128,501
_02073
ECD_02074: ECD_02074 - DUF2542 family protein, at 2,128,504 to 2,128,743
_02074
Position (kb)
2126
2127
2128 Strain fitness (log2 ratio)
-1
0
1 at 2125.880 kb on + strand, within ECD_02070 at 2126.085 kb on + strand, within ECD_02071 at 2126.153 kb on - strand, within ECD_02071 at 2126.155 kb on - strand, within ECD_02071 at 2126.164 kb on + strand, within ECD_02071 at 2126.412 kb on - strand, within ECD_02071 at 2126.432 kb on + strand, within ECD_02071 at 2126.438 kb on + strand, within ECD_02071 at 2126.531 kb on + strand, within ECD_02071 at 2126.532 kb on - strand, within ECD_02071 at 2126.649 kb on - strand at 2126.649 kb on - strand at 2126.689 kb on + strand at 2126.691 kb on + strand at 2126.734 kb on + strand at 2126.814 kb on - strand at 2126.829 kb on + strand at 2127.119 kb on + strand, within ECD_02072 at 2127.226 kb on - strand, within ECD_02072 at 2127.263 kb on + strand, within ECD_02072 at 2127.363 kb on + strand, within ECD_02072 at 2127.364 kb on - strand, within ECD_02072 at 2127.364 kb on - strand, within ECD_02072 at 2127.369 kb on - strand, within ECD_02072 at 2127.410 kb on + strand, within ECD_02072 at 2127.501 kb on + strand, within ECD_02072 at 2127.630 kb on + strand at 2127.810 kb on + strand at 2127.882 kb on - strand, within ECD_02073 at 2127.882 kb on - strand, within ECD_02073 at 2127.883 kb on + strand, within ECD_02073 at 2127.884 kb on - strand, within ECD_02073 at 2127.884 kb on - strand, within ECD_02073 at 2127.975 kb on - strand, within ECD_02073 at 2128.010 kb on + strand, within ECD_02073 at 2128.035 kb on + strand, within ECD_02073 at 2128.315 kb on - strand, within ECD_02073
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 2,125,880 + ECD_02070 0.88 -0.0 2,126,085 + ECD_02071 0.23 -0.5 2,126,153 - ECD_02071 0.33 -0.3 2,126,155 - ECD_02071 0.33 -0.0 2,126,164 + ECD_02071 0.35 -1.2 2,126,412 - ECD_02071 0.70 +0.2 2,126,432 + ECD_02071 0.73 +1.4 2,126,438 + ECD_02071 0.74 -0.7 2,126,531 + ECD_02071 0.87 +0.8 2,126,532 - ECD_02071 0.88 -0.1 2,126,649 - -0.2 2,126,649 - +0.3 2,126,689 + -0.2 2,126,691 + +0.5 2,126,734 + -0.1 2,126,814 - -0.0 2,126,829 + +0.3 2,127,119 + ECD_02072 0.42 +0.0 2,127,226 - ECD_02072 0.54 -0.3 2,127,263 + ECD_02072 0.58 +0.4 2,127,363 + ECD_02072 0.69 -0.6 2,127,364 - ECD_02072 0.70 -0.1 2,127,364 - ECD_02072 0.70 -0.6 2,127,369 - ECD_02072 0.70 +0.1 2,127,410 + ECD_02072 0.75 -1.0 2,127,501 + ECD_02072 0.85 -0.4 2,127,630 + +0.5 2,127,810 + +0.1 2,127,882 - ECD_02073 0.14 -1.1 2,127,882 - ECD_02073 0.14 -0.2 2,127,883 + ECD_02073 0.14 -0.3 2,127,884 - ECD_02073 0.14 +0.0 2,127,884 - ECD_02073 0.14 -0.8 2,127,975 - ECD_02073 0.27 +0.2 2,128,010 + ECD_02073 0.32 +0.0 2,128,035 + ECD_02073 0.35 -0.1 2,128,315 - ECD_02073 0.74 -0.2
Or see this region's nucleotide sequence