Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02018 and ECD_02019 are separated by 3 nucleotides ECD_02019 and ECD_02020 are separated by 30 nucleotides ECD_02020 and ECD_02021 are separated by 9 nucleotides ECD_02021 and ECD_02024 are separated by 28 nucleotides
ECD_02018: ECD_02018 - galactitol-specific enzyme IIC component of PTS, at 2,070,726 to 2,072,081
_02018
ECD_02019: ECD_02019 - galactitol-specific enzyme IIB component of PTS, at 2,072,085 to 2,072,369
_02019
ECD_02020: ECD_02020 - galactitol-specific enzyme IIA component of PTS, at 2,072,400 to 2,072,852
_02020
ECD_02021: ECD_02021 - D-tagatose 1,6-bisphosphate aldolase 2, subunit, at 2,072,862 to 2,074,124
_02021
ECD_02024: ECD_02024 - D-tagatose 1,6-bisphosphate aldolase 2, catalytic subunit, at 2,074,153 to 2,075,007
_02024
Position (kb)
2072
2073
2074
2075 Strain fitness (log2 ratio)
-1
0
1 at 2072.095 kb on - strand at 2072.649 kb on - strand, within ECD_02020 at 2072.941 kb on - strand at 2072.941 kb on - strand at 2073.535 kb on - strand, within ECD_02021 at 2073.571 kb on - strand, within ECD_02021 at 2073.571 kb on - strand, within ECD_02021 at 2073.788 kb on - strand, within ECD_02021 at 2073.788 kb on - strand, within ECD_02021 at 2073.959 kb on - strand, within ECD_02021 at 2074.460 kb on + strand, within ECD_02024 at 2074.461 kb on - strand, within ECD_02024 at 2074.461 kb on - strand, within ECD_02024 at 2074.465 kb on - strand, within ECD_02024 at 2074.846 kb on - strand, within ECD_02024
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 2,072,095 - -0.1 2,072,649 - ECD_02020 0.55 +1.3 2,072,941 - +0.1 2,072,941 - +1.3 2,073,535 - ECD_02021 0.53 -0.1 2,073,571 - ECD_02021 0.56 +0.6 2,073,571 - ECD_02021 0.56 +0.6 2,073,788 - ECD_02021 0.73 +0.8 2,073,788 - ECD_02021 0.73 +0.4 2,073,959 - ECD_02021 0.87 +0.3 2,074,460 + ECD_02024 0.36 -0.2 2,074,461 - ECD_02024 0.36 +0.3 2,074,461 - ECD_02024 0.36 +0.4 2,074,465 - ECD_02024 0.36 +0.4 2,074,846 - ECD_02024 0.81 +0.6
Or see this region's nucleotide sequence