Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01924 and ECD_01925 overlap by 1 nucleotides ECD_01925 and ECD_01926 overlap by 1 nucleotides ECD_01926 and ECD_01927 overlap by 19 nucleotides ECD_01927 and ECD_01928 overlap by 7 nucleotides
ECD_01924: ECD_01924 - histidinol-phosphatase and imidazoleglycerol-phosphate dehydratase, at 1,989,271 to 1,990,338
_01924
ECD_01925: ECD_01925 - imidazole glycerol phosphate synthase, glutamine amidotransferase subunit, at 1,990,338 to 1,990,928
_01925
ECD_01926: ECD_01926 - N-(5'-phospho-L-ribosyl-formimino)-5-amino-1- (5'-phosphoribosyl)-4-imidazolecarboxamide isomerase, at 1,990,928 to 1,991,665
_01926
ECD_01927: ECD_01927 - imidazole glycerol phosphate synthase, catalytic subunit with HisH, at 1,991,647 to 1,992,423
_01927
ECD_01928: ECD_01928 - phosphoribosyl-AMP cyclohydrolase and phosphoribosyl-ATP pyrophosphatase, at 1,992,417 to 1,993,028
_01928
Position (kb)
1990
1991
1992 Strain fitness (log2 ratio)
-2
-1
0
1 at 1989.943 kb on + strand, within ECD_01924 at 1990.112 kb on - strand, within ECD_01924 at 1990.189 kb on + strand, within ECD_01924 at 1990.247 kb on + strand at 1990.336 kb on + strand at 1990.755 kb on + strand, within ECD_01925 at 1990.756 kb on - strand, within ECD_01925 at 1990.808 kb on + strand, within ECD_01925 at 1990.933 kb on + strand at 1990.944 kb on + strand at 1990.968 kb on + strand at 1991.298 kb on + strand, within ECD_01926 at 1991.405 kb on + strand, within ECD_01926 at 1991.484 kb on + strand, within ECD_01926 at 1991.484 kb on + strand, within ECD_01926 at 1991.486 kb on + strand, within ECD_01926 at 1991.663 kb on + strand at 1992.416 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 1,989,943 + ECD_01924 0.63 -0.9 1,990,112 - ECD_01924 0.79 -0.6 1,990,189 + ECD_01924 0.86 -0.3 1,990,247 + -1.4 1,990,336 + -1.8 1,990,755 + ECD_01925 0.71 -0.9 1,990,756 - ECD_01925 0.71 +0.2 1,990,808 + ECD_01925 0.80 -1.2 1,990,933 + +0.3 1,990,944 + +0.1 1,990,968 + +0.2 1,991,298 + ECD_01926 0.50 -0.8 1,991,405 + ECD_01926 0.65 -0.3 1,991,484 + ECD_01926 0.75 -1.3 1,991,484 + ECD_01926 0.75 -1.7 1,991,486 + ECD_01926 0.76 -0.2 1,991,663 + +0.3 1,992,416 + -0.8
Or see this region's nucleotide sequence