Strain Fitness in Escherichia coli BL21 around ECD_01901

Experiment: Mixed culture, Halobacteriovorax-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01900 and ECD_01901 are separated by 11 nucleotidesECD_01901 and ECD_01902 overlap by 4 nucleotides ECD_01900: ECD_01900 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 1,968,536 to 1,969,615 _01900 ECD_01901: ECD_01901 - cobalamin synthase, at 1,969,627 to 1,970,370 _01901 ECD_01902: ECD_01902 - cobinamide kinase and cobinamide phosphate guanylyltransferase, at 1,970,367 to 1,970,912 _01902 Position (kb) 1969 1970 1971Strain fitness (log2 ratio) -1 0 1at 1968.861 kb on - strand, within ECD_01900at 1969.146 kb on - strand, within ECD_01900at 1969.146 kb on - strand, within ECD_01900at 1969.280 kb on + strand, within ECD_01900at 1969.421 kb on - strand, within ECD_01900at 1969.589 kb on - strandat 1969.790 kb on - strand, within ECD_01901at 1969.898 kb on + strand, within ECD_01901at 1969.899 kb on - strand, within ECD_01901at 1969.899 kb on - strand, within ECD_01901at 1970.009 kb on - strand, within ECD_01901at 1970.086 kb on - strand, within ECD_01901at 1970.170 kb on - strand, within ECD_01901at 1970.246 kb on - strand, within ECD_01901at 1970.518 kb on - strand, within ECD_01902

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1
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1,968,861 - ECD_01900 0.30 +0.5
1,969,146 - ECD_01900 0.56 -0.6
1,969,146 - ECD_01900 0.56 +0.1
1,969,280 + ECD_01900 0.69 +1.0
1,969,421 - ECD_01900 0.82 -0.6
1,969,589 - +0.8
1,969,790 - ECD_01901 0.22 -0.7
1,969,898 + ECD_01901 0.36 +0.5
1,969,899 - ECD_01901 0.37 +0.5
1,969,899 - ECD_01901 0.37 +0.3
1,970,009 - ECD_01901 0.51 +0.2
1,970,086 - ECD_01901 0.62 -0.5
1,970,170 - ECD_01901 0.73 +1.2
1,970,246 - ECD_01901 0.83 -0.9
1,970,518 - ECD_01902 0.28 +0.3

Or see this region's nucleotide sequence