Strain Fitness in Escherichia coli BL21 around ECD_01637

Experiment: Mixed culture, Halobacteriovorax-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_t00027 and ECD_t00028 are separated by 4 nucleotidesECD_t00028 and ECD_01636 are separated by 107 nucleotidesECD_01636 and ECD_01637 are separated by 125 nucleotidesECD_01637 and ECD_01638 are separated by 11 nucleotidesECD_01638 and ECD_01639 are separated by 3 nucleotides ECD_t00027: ECD_t00027 - tRNA-Val, at 1,691,704 to 1,691,780 _t00027 ECD_t00028: ECD_t00028 - tRNA-Val, at 1,691,785 to 1,691,861 _t00028 ECD_01636: ECD_01636 - putative monooxygenase, at 1,691,969 to 1,692,274 _01636 ECD_01637: ECD_01637 - putative oxidoreductase, at 1,692,400 to 1,694,004 _01637 ECD_01638: ECD_01638 - FNR, Nar, NarP-regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex, at 1,694,016 to 1,694,828 _01638 ECD_01639: ECD_01639 - putative cytochrome b subunit of YdhYVWXUT oxidoreductase complex, at 1,694,832 to 1,695,617 _01639 Position (kb) 1692 1693 1694 1695Strain fitness (log2 ratio) -1 0 1at 1691.439 kb on - strandat 1691.695 kb on + strandat 1691.695 kb on + strandat 1691.695 kb on + strandat 1691.711 kb on + strandat 1691.711 kb on + strandat 1691.916 kb on + strandat 1691.916 kb on + strandat 1693.165 kb on - strand, within ECD_01637at 1693.601 kb on + strand, within ECD_01637at 1694.319 kb on - strand, within ECD_01638

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1
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1,691,439 - +1.1
1,691,695 + +0.1
1,691,695 + +0.1
1,691,695 + +0.4
1,691,711 + +0.7
1,691,711 + +0.1
1,691,916 + +0.2
1,691,916 + -0.3
1,693,165 - ECD_01637 0.48 -0.6
1,693,601 + ECD_01637 0.75 +1.1
1,694,319 - ECD_01638 0.37 +0.4

Or see this region's nucleotide sequence