Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_t00027 and ECD_t00028 are separated by 4 nucleotides ECD_t00028 and ECD_01636 are separated by 107 nucleotides ECD_01636 and ECD_01637 are separated by 125 nucleotides ECD_01637 and ECD_01638 are separated by 11 nucleotides ECD_01638 and ECD_01639 are separated by 3 nucleotides
ECD_t00027: ECD_t00027 - tRNA-Val, at 1,691,704 to 1,691,780
_t00027
ECD_t00028: ECD_t00028 - tRNA-Val, at 1,691,785 to 1,691,861
_t00028
ECD_01636: ECD_01636 - putative monooxygenase, at 1,691,969 to 1,692,274
_01636
ECD_01637: ECD_01637 - putative oxidoreductase, at 1,692,400 to 1,694,004
_01637
ECD_01638: ECD_01638 - FNR, Nar, NarP-regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex, at 1,694,016 to 1,694,828
_01638
ECD_01639: ECD_01639 - putative cytochrome b subunit of YdhYVWXUT oxidoreductase complex, at 1,694,832 to 1,695,617
_01639
Position (kb)
1692
1693
1694
1695 Strain fitness (log2 ratio)
-1
0
1 at 1691.439 kb on - strand at 1691.695 kb on + strand at 1691.695 kb on + strand at 1691.695 kb on + strand at 1691.711 kb on + strand at 1691.711 kb on + strand at 1691.916 kb on + strand at 1691.916 kb on + strand at 1693.165 kb on - strand, within ECD_01637 at 1693.601 kb on + strand, within ECD_01637 at 1694.319 kb on - strand, within ECD_01638
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 1,691,439 - +1.1 1,691,695 + +0.1 1,691,695 + +0.1 1,691,695 + +0.4 1,691,711 + +0.7 1,691,711 + +0.1 1,691,916 + +0.2 1,691,916 + -0.3 1,693,165 - ECD_01637 0.48 -0.6 1,693,601 + ECD_01637 0.75 +1.1 1,694,319 - ECD_01638 0.37 +0.4
Or see this region's nucleotide sequence