Strain Fitness in Escherichia coli BL21 around ECD_01601

Experiment: Mixed culture, Halobacteriovorax-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01600 and ECD_01601 are separated by 3 nucleotidesECD_01601 and ECD_01602 are separated by 3 nucleotidesECD_01602 and ECD_01603 overlap by 1 nucleotides ECD_01600: ECD_01600 - SoxR iron-sulfur cluster reduction factor component; putative membrane protein of electron transport complex, at 1,654,338 to 1,655,396 _01600 ECD_01601: ECD_01601 - SoxR iron-sulfur cluster reduction factor component; putative membrane protein of electron transport complex, at 1,655,400 to 1,656,020 _01601 ECD_01602: ECD_01602 - SoxR iron-sulfur cluster reduction factor component; electron transport inner membrane NADH-quinone reductase, at 1,656,024 to 1,656,719 _01602 ECD_01603: ECD_01603 - DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III), at 1,656,719 to 1,657,354 _01603 Position (kb) 1655 1656 1657Strain fitness (log2 ratio) -1 0 1at 1654.913 kb on + strand, within ECD_01600at 1654.952 kb on + strand, within ECD_01600at 1655.562 kb on + strand, within ECD_01601

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1
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1,654,913 + ECD_01600 0.54 +0.4
1,654,952 + ECD_01600 0.58 -0.3
1,655,562 + ECD_01601 0.26 -0.7

Or see this region's nucleotide sequence