Strain Fitness in Escherichia coli BL21 around ECD_01010
Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Mixed culture, Halobacteriovorax-1 |
---|---|---|---|---|---|
remove | |||||
1,073,164 | - | ECD_01009 | 0.28 | -0.4 | |
1,073,202 | + | ECD_01009 | 0.31 | +0.4 | |
1,073,202 | + | ECD_01009 | 0.31 | +1.2 | |
1,073,203 | - | ECD_01009 | 0.31 | -0.1 | |
1,073,203 | - | ECD_01009 | 0.31 | +0.9 | |
1,073,203 | - | ECD_01009 | 0.31 | -0.3 | |
1,073,280 | + | ECD_01009 | 0.37 | +0.4 | |
1,073,280 | + | ECD_01009 | 0.37 | +0.5 | |
1,073,281 | - | ECD_01009 | 0.37 | +0.3 | |
1,073,281 | - | ECD_01009 | 0.37 | +1.9 | |
1,073,331 | - | ECD_01009 | 0.40 | -0.2 | |
1,073,472 | - | ECD_01009 | 0.51 | -1.0 | |
1,073,575 | + | ECD_01009 | 0.59 | +0.5 | |
1,073,605 | + | ECD_01009 | 0.61 | -0.1 | |
1,073,755 | - | ECD_01009 | 0.72 | -0.0 | |
1,073,933 | + | ECD_01009 | 0.86 | -0.2 | |
1,073,975 | + | ECD_01009 | 0.89 | +1.0 | |
1,074,143 | + | +0.4 | |||
1,074,649 | - | -0.1 | |||
1,074,727 | + | ECD_01011 | 0.14 | +0.1 | |
1,075,129 | - | ECD_01011 | 0.82 | -0.4 | |
1,075,271 | + | +0.2 | |||
1,075,272 | - | +0.6 | |||
1,075,477 | + | ECD_01012 | 0.29 | +0.1 | |
1,075,501 | + | ECD_01012 | 0.32 | +0.5 |
Or see this region's nucleotide sequence