Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00981 and ECD_00982 are separated by 11 nucleotides ECD_00982 and ECD_04302 are separated by 12 nucleotides ECD_04302 and ECD_00983 are separated by 79 nucleotides
ECD_00981: ECD_00981 - cytochrome bd-II oxidase, subunit I, at 1,042,829 to 1,044,373
_00981
ECD_00982: ECD_00982 - cytochrome bd-II oxidase, subunit II, at 1,044,385 to 1,045,521
_00982
ECD_04302: ECD_04302 - putative cytochrome bd-II oxidase subunit, at 1,045,534 to 1,045,626
_04302
ECD_00983: ECD_00983 - phosphoanhydride phosphorylase, at 1,045,706 to 1,047,004
_00983
Position (kb)
1044
1045
1046 Strain fitness (log2 ratio)
-1
0
1 at 1043.422 kb on + strand, within ECD_00981 at 1043.422 kb on + strand, within ECD_00981 at 1043.444 kb on + strand, within ECD_00981 at 1043.444 kb on + strand, within ECD_00981 at 1043.449 kb on - strand, within ECD_00981 at 1043.727 kb on + strand, within ECD_00981 at 1043.794 kb on + strand, within ECD_00981 at 1043.795 kb on - strand, within ECD_00981 at 1043.808 kb on + strand, within ECD_00981 at 1044.273 kb on - strand at 1044.620 kb on - strand, within ECD_00982 at 1044.643 kb on + strand, within ECD_00982 at 1044.947 kb on + strand, within ECD_00982 at 1045.399 kb on - strand, within ECD_00982 at 1045.399 kb on - strand, within ECD_00982 at 1045.441 kb on + strand at 1045.541 kb on - strand at 1045.544 kb on + strand, within ECD_04302 at 1045.633 kb on + strand at 1045.684 kb on + strand at 1045.932 kb on + strand, within ECD_00983 at 1045.933 kb on - strand, within ECD_00983 at 1046.026 kb on + strand, within ECD_00983 at 1046.107 kb on - strand, within ECD_00983 at 1046.122 kb on + strand, within ECD_00983 at 1046.146 kb on + strand, within ECD_00983 at 1046.147 kb on - strand, within ECD_00983 at 1046.308 kb on + strand, within ECD_00983
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 1,043,422 + ECD_00981 0.38 -0.2 1,043,422 + ECD_00981 0.38 +0.6 1,043,444 + ECD_00981 0.40 +1.3 1,043,444 + ECD_00981 0.40 -0.4 1,043,449 - ECD_00981 0.40 -0.2 1,043,727 + ECD_00981 0.58 -1.3 1,043,794 + ECD_00981 0.62 +0.3 1,043,795 - ECD_00981 0.63 -0.4 1,043,808 + ECD_00981 0.63 -0.4 1,044,273 - -0.2 1,044,620 - ECD_00982 0.21 -0.5 1,044,643 + ECD_00982 0.23 +0.5 1,044,947 + ECD_00982 0.49 +0.7 1,045,399 - ECD_00982 0.89 +1.0 1,045,399 - ECD_00982 0.89 +1.3 1,045,441 + +0.8 1,045,541 - +0.3 1,045,544 + ECD_04302 0.11 +0.8 1,045,633 + +0.0 1,045,684 + -0.1 1,045,932 + ECD_00983 0.17 +1.2 1,045,933 - ECD_00983 0.17 -0.2 1,046,026 + ECD_00983 0.25 -0.5 1,046,107 - ECD_00983 0.31 +0.4 1,046,122 + ECD_00983 0.32 +0.5 1,046,146 + ECD_00983 0.34 +0.1 1,046,147 - ECD_00983 0.34 -0.4 1,046,308 + ECD_00983 0.46 -0.2
Or see this region's nucleotide sequence