Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00945 and ECD_00946 are separated by 11 nucleotides ECD_00946 and ECD_00947 are separated by 7 nucleotides ECD_00947 and ECD_00948 overlap by 8 nucleotides ECD_00948 and ECD_00949 are separated by 110 nucleotides
ECD_00945: ECD_00945 - putative fimbrial-like adhesin protein, at 1,006,896 to 1,007,966
_00945
ECD_00946: ECD_00946 - putative fimbriae protein, at 1,007,978 to 1,008,520
_00946
ECD_00947: ECD_00947 - putative fimbrial-like adhesin protein, at 1,008,528 to 1,009,043
_00947
ECD_00948: ECD_00948 - putative periplasmic pilin chaperone, at 1,009,036 to 1,009,746
_00948
ECD_00949: ECD_00949 - dihydro-orotate oxidase, FMN-linked, at 1,009,857 to 1,010,867
_00949
Position (kb)
1008
1009
1010 Strain fitness (log2 ratio)
-1
0
1 at 1007.626 kb on + strand, within ECD_00945 at 1007.759 kb on + strand, within ECD_00945 at 1007.814 kb on - strand, within ECD_00945 at 1007.814 kb on - strand, within ECD_00945 at 1007.909 kb on - strand at 1008.073 kb on + strand, within ECD_00946 at 1008.297 kb on + strand, within ECD_00946 at 1008.448 kb on + strand, within ECD_00946 at 1008.448 kb on + strand, within ECD_00946 at 1008.586 kb on + strand, within ECD_00947 at 1008.635 kb on + strand, within ECD_00947 at 1008.635 kb on + strand, within ECD_00947 at 1008.932 kb on - strand, within ECD_00947 at 1009.044 kb on + strand at 1009.209 kb on + strand, within ECD_00948 at 1009.293 kb on + strand, within ECD_00948 at 1009.505 kb on - strand, within ECD_00948 at 1009.541 kb on + strand, within ECD_00948 at 1009.592 kb on + strand, within ECD_00948
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 1,007,626 + ECD_00945 0.68 +0.2 1,007,759 + ECD_00945 0.81 -0.1 1,007,814 - ECD_00945 0.86 -0.2 1,007,814 - ECD_00945 0.86 +1.1 1,007,909 - +0.0 1,008,073 + ECD_00946 0.17 -0.1 1,008,297 + ECD_00946 0.59 -0.4 1,008,448 + ECD_00946 0.87 -0.1 1,008,448 + ECD_00946 0.87 +0.2 1,008,586 + ECD_00947 0.11 +0.3 1,008,635 + ECD_00947 0.21 +0.3 1,008,635 + ECD_00947 0.21 -0.2 1,008,932 - ECD_00947 0.78 +0.1 1,009,044 + +0.1 1,009,209 + ECD_00948 0.24 +0.4 1,009,293 + ECD_00948 0.36 -0.7 1,009,505 - ECD_00948 0.66 +0.5 1,009,541 + ECD_00948 0.71 -0.4 1,009,592 + ECD_00948 0.78 -0.6
Or see this region's nucleotide sequence