Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00928 and ECD_00929 are separated by 260 nucleotides ECD_00929 and ECD_00930 are separated by 180 nucleotides ECD_00930 and ECD_00931 are separated by 26 nucleotides
ECD_00928: ECD_00928 - chromosome condensin MukBEF, ATPase and DNA-binding subunit, at 981,416 to 985,876
_00928
ECD_00929: ECD_00929 - murein L,D-transpeptidase, at 986,137 to 987,984
_00929
ECD_00930: ECD_00930 - M15A protease-related family periplasmic protein, at 988,165 to 988,713
_00930
ECD_00931: ECD_00931 - putative metal-binding enzyme, at 988,740 to 989,387
_00931
Position (kb) 986
987
988 Strain fitness (log2 ratio) -2
-1
0
1 at 985.990 kb on - strand at 985.990 kb on - strand at 986.010 kb on - strand at 986.113 kb on + strand at 986.145 kb on + strand at 986.393 kb on - strand, within ECD_00929 at 986.429 kb on - strand, within ECD_00929 at 986.663 kb on - strand, within ECD_00929 at 986.663 kb on - strand, within ECD_00929 at 986.664 kb on + strand, within ECD_00929 at 986.883 kb on + strand, within ECD_00929 at 986.910 kb on - strand, within ECD_00929 at 987.003 kb on + strand, within ECD_00929 at 987.085 kb on + strand, within ECD_00929 at 987.186 kb on - strand, within ECD_00929 at 987.298 kb on + strand, within ECD_00929 at 987.298 kb on + strand, within ECD_00929 at 987.441 kb on + strand, within ECD_00929 at 987.625 kb on - strand, within ECD_00929 at 987.823 kb on + strand at 987.922 kb on + strand at 987.922 kb on + strand at 987.922 kb on + strand at 987.991 kb on + strand at 988.017 kb on + strand at 988.151 kb on + strand at 988.347 kb on + strand, within ECD_00930 at 988.460 kb on + strand, within ECD_00930 at 988.657 kb on + strand, within ECD_00930 at 988.683 kb on + strand at 988.751 kb on + strand at 988.789 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 985,990 - -1.9 985,990 - -1.7 986,010 - +1.0 986,113 + +0.0 986,145 + +0.8 986,393 - ECD_00929 0.14 +0.5 986,429 - ECD_00929 0.16 -0.2 986,663 - ECD_00929 0.28 +0.6 986,663 - ECD_00929 0.28 +0.5 986,664 + ECD_00929 0.29 +0.5 986,883 + ECD_00929 0.40 -0.5 986,910 - ECD_00929 0.42 -0.3 987,003 + ECD_00929 0.47 +0.0 987,085 + ECD_00929 0.51 +0.6 987,186 - ECD_00929 0.57 +0.5 987,298 + ECD_00929 0.63 +1.2 987,298 + ECD_00929 0.63 -0.2 987,441 + ECD_00929 0.71 +0.1 987,625 - ECD_00929 0.81 -0.2 987,823 + +0.3 987,922 + -0.4 987,922 + +0.8 987,922 + +0.0 987,991 + -0.2 988,017 + +1.4 988,151 + -0.2 988,347 + ECD_00930 0.33 -2.1 988,460 + ECD_00930 0.54 -0.7 988,657 + ECD_00930 0.90 -1.0 988,683 + +1.6 988,751 + -0.5 988,789 + -0.4
Or see this region's nucleotide sequence