Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00766 and ECD_00767 are separated by 27 nucleotides ECD_00767 and ECD_00768 are separated by 140 nucleotides
ECD_00766: ECD_00766 - ATP-dependent DNA helicase, at 817,062 to 819,212
_00766
ECD_00767: ECD_00767 - putative family 3 glycosyltransferase, at 819,240 to 820,202
_00767
ECD_00768: ECD_00768 - putative dehydrogenase, at 820,343 to 821,428
_00768
Position (kb) 819
820
821 Strain fitness (log2 ratio) -1
0
1 at 818.347 kb on + strand, within ECD_00766 at 818.347 kb on + strand, within ECD_00766 at 818.348 kb on - strand, within ECD_00766 at 818.613 kb on - strand, within ECD_00766 at 818.669 kb on + strand, within ECD_00766 at 818.677 kb on + strand, within ECD_00766 at 818.719 kb on - strand, within ECD_00766 at 819.161 kb on + strand at 819.161 kb on + strand at 819.162 kb on - strand at 819.162 kb on - strand at 819.163 kb on + strand at 819.324 kb on + strand at 819.325 kb on - strand at 819.332 kb on + strand at 819.333 kb on - strand at 819.501 kb on + strand, within ECD_00767 at 819.644 kb on + strand, within ECD_00767 at 819.644 kb on + strand, within ECD_00767 at 819.705 kb on - strand, within ECD_00767 at 819.785 kb on + strand, within ECD_00767 at 819.858 kb on + strand, within ECD_00767 at 819.910 kb on + strand, within ECD_00767 at 819.910 kb on + strand, within ECD_00767 at 819.911 kb on - strand, within ECD_00767 at 819.920 kb on + strand, within ECD_00767 at 819.999 kb on + strand, within ECD_00767 at 820.164 kb on - strand at 820.322 kb on + strand at 820.322 kb on + strand at 820.327 kb on + strand at 820.490 kb on - strand, within ECD_00768 at 820.508 kb on + strand, within ECD_00768 at 820.508 kb on + strand, within ECD_00768 at 820.508 kb on + strand, within ECD_00768 at 820.512 kb on + strand, within ECD_00768 at 820.512 kb on + strand, within ECD_00768 at 820.512 kb on + strand, within ECD_00768 at 820.513 kb on - strand, within ECD_00768 at 820.930 kb on + strand, within ECD_00768 at 821.044 kb on + strand, within ECD_00768 at 821.150 kb on - strand, within ECD_00768
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 818,347 + ECD_00766 0.60 -0.4 818,347 + ECD_00766 0.60 +1.1 818,348 - ECD_00766 0.60 -1.2 818,613 - ECD_00766 0.72 +0.2 818,669 + ECD_00766 0.75 -0.1 818,677 + ECD_00766 0.75 +0.2 818,719 - ECD_00766 0.77 +1.6 819,161 + -0.1 819,161 + +0.3 819,162 - +0.6 819,162 - +0.4 819,163 + -0.5 819,324 + +0.4 819,325 - +0.3 819,332 + +0.5 819,333 - +0.3 819,501 + ECD_00767 0.27 +0.1 819,644 + ECD_00767 0.42 -1.0 819,644 + ECD_00767 0.42 +0.8 819,705 - ECD_00767 0.48 +0.2 819,785 + ECD_00767 0.57 -0.1 819,858 + ECD_00767 0.64 -0.2 819,910 + ECD_00767 0.70 +1.1 819,910 + ECD_00767 0.70 -0.9 819,911 - ECD_00767 0.70 +0.5 819,920 + ECD_00767 0.71 +1.5 819,999 + ECD_00767 0.79 +0.3 820,164 - +1.1 820,322 + +0.2 820,322 + +0.0 820,327 + +0.1 820,490 - ECD_00768 0.14 -0.1 820,508 + ECD_00768 0.15 +0.6 820,508 + ECD_00768 0.15 +0.4 820,508 + ECD_00768 0.15 +0.0 820,512 + ECD_00768 0.16 +0.4 820,512 + ECD_00768 0.16 +0.5 820,512 + ECD_00768 0.16 -0.2 820,513 - ECD_00768 0.16 +0.5 820,930 + ECD_00768 0.54 -0.4 821,044 + ECD_00768 0.65 -0.2 821,150 - ECD_00768 0.74 +1.3
Or see this region's nucleotide sequence