Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00756 and ECD_00757 overlap by 4 nucleotides ECD_00757 and ECD_00758 are separated by 132 nucleotides ECD_00758 and ECD_00759 overlap by 39 nucleotides
ECD_00756: ECD_00756 - cardiolipin synthase 2, at 806,490 to 807,731
_00756
ECD_00757: ECD_00757 - endo/exonuclease/phosphatase family protein, at 807,728 to 808,489
_00757
ECD_00758: ECD_00758 - inner membrane protein, at 808,622 to 809,032
_00758
ECD_00759: ECD_00759 - putative ABC transporter permease, at 808,994 to 810,100
_00759
Position (kb) 808
809
810 Strain fitness (log2 ratio) -1
0
1 at 807.670 kb on + strand at 807.673 kb on + strand at 807.674 kb on - strand at 807.722 kb on + strand at 807.723 kb on - strand at 807.828 kb on + strand, within ECD_00757 at 807.829 kb on - strand, within ECD_00757 at 807.829 kb on - strand, within ECD_00757 at 807.845 kb on + strand, within ECD_00757 at 808.068 kb on - strand, within ECD_00757 at 808.171 kb on - strand, within ECD_00757 at 808.224 kb on + strand, within ECD_00757 at 808.226 kb on + strand, within ECD_00757 at 808.227 kb on - strand, within ECD_00757 at 808.282 kb on - strand, within ECD_00757 at 808.490 kb on - strand at 808.692 kb on + strand, within ECD_00758 at 808.763 kb on + strand, within ECD_00758 at 808.995 kb on + strand at 809.006 kb on - strand at 809.071 kb on + strand at 809.071 kb on + strand at 809.072 kb on - strand at 809.227 kb on + strand, within ECD_00759 at 809.227 kb on + strand, within ECD_00759 at 809.228 kb on - strand, within ECD_00759 at 809.307 kb on - strand, within ECD_00759 at 809.590 kb on - strand, within ECD_00759 at 809.606 kb on - strand, within ECD_00759 at 809.608 kb on - strand, within ECD_00759 at 809.697 kb on + strand, within ECD_00759 at 809.728 kb on + strand, within ECD_00759 at 809.908 kb on + strand, within ECD_00759 at 809.909 kb on - strand, within ECD_00759 at 809.932 kb on + strand, within ECD_00759 at 809.944 kb on - strand, within ECD_00759
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 807,670 + -0.3 807,673 + -0.2 807,674 - +0.5 807,722 + +0.2 807,723 - +0.3 807,828 + ECD_00757 0.13 -1.2 807,829 - ECD_00757 0.13 +0.1 807,829 - ECD_00757 0.13 -0.6 807,845 + ECD_00757 0.15 -0.3 808,068 - ECD_00757 0.45 +0.8 808,171 - ECD_00757 0.58 -0.2 808,224 + ECD_00757 0.65 -0.5 808,226 + ECD_00757 0.65 +0.3 808,227 - ECD_00757 0.65 -0.0 808,282 - ECD_00757 0.73 -1.0 808,490 - +0.5 808,692 + ECD_00758 0.17 +0.5 808,763 + ECD_00758 0.34 +0.1 808,995 + -0.4 809,006 - -0.2 809,071 + +0.1 809,071 + -0.9 809,072 - +0.2 809,227 + ECD_00759 0.21 -0.6 809,227 + ECD_00759 0.21 +0.5 809,228 - ECD_00759 0.21 +0.2 809,307 - ECD_00759 0.28 +0.1 809,590 - ECD_00759 0.54 -0.6 809,606 - ECD_00759 0.55 +0.5 809,608 - ECD_00759 0.55 -1.0 809,697 + ECD_00759 0.64 +0.5 809,728 + ECD_00759 0.66 +0.4 809,908 + ECD_00759 0.83 +0.1 809,909 - ECD_00759 0.83 -0.4 809,932 + ECD_00759 0.85 +0.9 809,944 - ECD_00759 0.86 -0.0
Or see this region's nucleotide sequence