Strain Fitness in Escherichia coli BL21 around ECD_00688

Experiment: Mixed culture, Halobacteriovorax-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00687 and ECD_00688 overlap by 1 nucleotidesECD_00688 and ECD_00689 are separated by 103 nucleotidesECD_00689 and ECD_00690 are separated by 108 nucleotides ECD_00687: ECD_00687 - succinyl-CoA synthetase, beta subunit, at 721,675 to 722,841 _00687 ECD_00688: ECD_00688 - succinyl-CoA synthetase, NAD(P)-binding, alpha subunit, at 722,841 to 723,710 _00688 ECD_00689: ECD_00689 - transcriptional repressor for the mannosyl-D-glycerate catabolic operon, at 723,814 to 724,536 _00689 ECD_00690: ECD_00690 - fused 2-O-a-mannosyl-D-glycerate specific PTS enzymes: IIA component/IIB component/IIC component, at 724,645 to 726,621 _00690 Position (kb) 722 723 724Strain fitness (log2 ratio) -2 -1 0 1at 721.925 kb on - strand, within ECD_00687at 721.999 kb on + strand, within ECD_00687at 722.022 kb on + strand, within ECD_00687at 722.146 kb on + strand, within ECD_00687at 722.187 kb on + strand, within ECD_00687at 722.428 kb on + strand, within ECD_00687at 722.446 kb on - strand, within ECD_00687at 722.714 kb on + strand, within ECD_00687at 722.775 kb on + strandat 722.839 kb on + strandat 722.840 kb on - strandat 722.840 kb on - strandat 722.939 kb on + strand, within ECD_00688at 722.956 kb on + strand, within ECD_00688at 723.054 kb on + strand, within ECD_00688at 723.054 kb on + strand, within ECD_00688at 723.054 kb on + strand, within ECD_00688at 723.054 kb on + strand, within ECD_00688at 723.054 kb on + strand, within ECD_00688at 723.054 kb on + strand, within ECD_00688at 723.054 kb on + strand, within ECD_00688at 723.055 kb on - strand, within ECD_00688at 723.058 kb on + strand, within ECD_00688at 723.120 kb on - strand, within ECD_00688at 723.315 kb on + strand, within ECD_00688at 723.537 kb on + strand, within ECD_00688at 723.537 kb on + strand, within ECD_00688at 723.573 kb on - strand, within ECD_00688at 723.708 kb on + strandat 723.718 kb on + strandat 723.728 kb on + strandat 723.794 kb on + strandat 723.794 kb on + strandat 723.794 kb on + strandat 723.795 kb on - strandat 723.795 kb on - strandat 723.883 kb on - strandat 723.883 kb on - strandat 723.883 kb on - strandat 723.955 kb on - strand, within ECD_00689at 724.052 kb on + strand, within ECD_00689at 724.235 kb on - strand, within ECD_00689at 724.433 kb on - strand, within ECD_00689at 724.518 kb on - strandat 724.520 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1
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721,925 - ECD_00687 0.21 -1.2
721,999 + ECD_00687 0.28 -0.1
722,022 + ECD_00687 0.30 -0.5
722,146 + ECD_00687 0.40 +0.6
722,187 + ECD_00687 0.44 -0.9
722,428 + ECD_00687 0.65 -0.0
722,446 - ECD_00687 0.66 +0.5
722,714 + ECD_00687 0.89 -0.5
722,775 + +0.1
722,839 + -1.4
722,840 - -0.8
722,840 - -0.5
722,939 + ECD_00688 0.11 -1.2
722,956 + ECD_00688 0.13 +0.8
723,054 + ECD_00688 0.24 -0.7
723,054 + ECD_00688 0.24 -1.1
723,054 + ECD_00688 0.24 +0.1
723,054 + ECD_00688 0.24 -0.7
723,054 + ECD_00688 0.24 -0.4
723,054 + ECD_00688 0.24 -2.0
723,054 + ECD_00688 0.24 -0.2
723,055 - ECD_00688 0.25 +0.4
723,058 + ECD_00688 0.25 -0.8
723,120 - ECD_00688 0.32 -0.5
723,315 + ECD_00688 0.54 -0.2
723,537 + ECD_00688 0.80 -1.2
723,537 + ECD_00688 0.80 -0.2
723,573 - ECD_00688 0.84 -0.2
723,708 + +0.1
723,718 + +0.4
723,728 + -0.0
723,794 + -0.5
723,794 + +0.3
723,794 + +0.4
723,795 - -0.4
723,795 - -0.8
723,883 - +0.1
723,883 - -1.4
723,883 - +0.2
723,955 - ECD_00689 0.20 +0.1
724,052 + ECD_00689 0.33 +0.8
724,235 - ECD_00689 0.58 -0.4
724,433 - ECD_00689 0.86 +0.2
724,518 - -0.6
724,520 - -1.3

Or see this region's nucleotide sequence