Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00679 and ECD_00680 are separated by 389 nucleotides ECD_00680 and ECD_00681 are separated by 708 nucleotides
ECD_00679: ECD_00679 - putative fimbrial-like adhesin protein, at 710,799 to 711,365
_00679
ECD_00680: ECD_00680 - citrate synthase, at 711,755 to 713,038
_00680
ECD_00681: ECD_00681 - succinate dehydrogenase, membrane subunit, binds cytochrome b556, at 713,747 to 714,136
_00681
Position (kb) 711
712
713
714 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 710.858 kb on + strand, within ECD_00679 at 711.800 kb on - strand at 711.801 kb on + strand at 711.829 kb on + strand at 711.875 kb on - strand at 712.157 kb on - strand, within ECD_00680 at 712.319 kb on - strand, within ECD_00680 at 712.373 kb on - strand, within ECD_00680 at 712.381 kb on + strand, within ECD_00680 at 712.439 kb on - strand, within ECD_00680 at 712.459 kb on - strand, within ECD_00680 at 712.503 kb on + strand, within ECD_00680 at 712.504 kb on - strand, within ECD_00680 at 712.510 kb on - strand, within ECD_00680 at 712.583 kb on - strand, within ECD_00680 at 712.628 kb on - strand, within ECD_00680 at 712.628 kb on - strand, within ECD_00680 at 712.738 kb on - strand, within ECD_00680 at 712.776 kb on + strand, within ECD_00680 at 712.777 kb on - strand, within ECD_00680 at 712.792 kb on - strand, within ECD_00680 at 712.792 kb on - strand, within ECD_00680 at 712.843 kb on + strand, within ECD_00680 at 712.951 kb on + strand at 713.060 kb on - strand at 713.243 kb on - strand at 713.308 kb on - strand at 713.476 kb on + strand at 713.722 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 710,858 + ECD_00679 0.10 +0.6 711,800 - -2.5 711,801 + -2.4 711,829 + -1.5 711,875 - -4.7 712,157 - ECD_00680 0.31 -2.2 712,319 - ECD_00680 0.44 -1.8 712,373 - ECD_00680 0.48 -1.7 712,381 + ECD_00680 0.49 -1.7 712,439 - ECD_00680 0.53 -2.3 712,459 - ECD_00680 0.55 +0.6 712,503 + ECD_00680 0.58 -1.9 712,504 - ECD_00680 0.58 -2.0 712,510 - ECD_00680 0.59 -2.8 712,583 - ECD_00680 0.64 -2.9 712,628 - ECD_00680 0.68 -2.2 712,628 - ECD_00680 0.68 -2.4 712,738 - ECD_00680 0.77 -2.5 712,776 + ECD_00680 0.80 -1.6 712,777 - ECD_00680 0.80 -4.6 712,792 - ECD_00680 0.81 -3.5 712,792 - ECD_00680 0.81 -2.7 712,843 + ECD_00680 0.85 -2.6 712,951 + -2.9 713,060 - -1.2 713,243 - -0.4 713,308 - +0.5 713,476 + -0.2 713,722 + -0.2
Or see this region's nucleotide sequence