Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00654 and ECD_00655 are separated by 22 nucleotides ECD_00655 and ECD_00656 overlap by 1 nucleotides ECD_00656 and ECD_00657 are separated by 312 nucleotides
ECD_00654: ECD_00654 - potassium translocating ATPase, subunit B, at 684,862 to 686,910
_00654
ECD_00655: ECD_00655 - potassium translocating ATPase, subunit A, at 686,933 to 688,606
_00655
ECD_00656: ECD_00656 - potassium ion accessory transporter subunit, at 688,606 to 688,695
_00656
ECD_00657: ECD_00657 - DUF2517 family protein, at 689,008 to 689,214
_00657
Position (kb) 686
687
688
689 Strain fitness (log2 ratio) -1
0
1 at 686.530 kb on - strand, within ECD_00654 at 686.764 kb on - strand at 686.764 kb on - strand at 686.767 kb on - strand at 686.910 kb on + strand at 687.080 kb on - strand at 687.375 kb on - strand, within ECD_00655 at 687.431 kb on - strand, within ECD_00655 at 687.545 kb on - strand, within ECD_00655 at 687.920 kb on - strand, within ECD_00655 at 687.950 kb on + strand, within ECD_00655 at 688.230 kb on + strand, within ECD_00655 at 688.252 kb on + strand, within ECD_00655 at 688.253 kb on - strand, within ECD_00655 at 688.255 kb on - strand, within ECD_00655 at 688.984 kb on + strand at 689.040 kb on + strand, within ECD_00657
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 686,530 - ECD_00654 0.81 -0.8 686,764 - +0.1 686,764 - -0.1 686,767 - -0.5 686,910 + -0.9 687,080 - -1.3 687,375 - ECD_00655 0.26 -0.1 687,431 - ECD_00655 0.30 +0.8 687,545 - ECD_00655 0.37 +0.4 687,920 - ECD_00655 0.59 -0.5 687,950 + ECD_00655 0.61 -0.4 688,230 + ECD_00655 0.77 -0.4 688,252 + ECD_00655 0.79 +0.8 688,253 - ECD_00655 0.79 -0.8 688,255 - ECD_00655 0.79 -0.3 688,984 + -0.2 689,040 + ECD_00657 0.15 +0.8
Or see this region's nucleotide sequence