Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00538 and ECD_00539 are separated by 107 nucleotides ECD_00539 and ECD_00540 are separated by 93 nucleotides ECD_00540 and ECD_00541 are separated by 64 nucleotides ECD_00541 and ECD_00542 are separated by 65 nucleotides
ECD_00538: ECD_00538 - mechanosensitive channel protein, miniconductance, at 562,085 to 563,332
_00538
ECD_00539: ECD_00539 - dihydropteridine reductase, NAD(P)H-dependent, oxygen-insensitive, at 563,440 to 564,093
_00539
ECD_00540: ECD_00540 - DUF419 family protein, at 564,187 to 564,555
_00540
ECD_00541: ECD_00541 - DUF1158 family putative inner membrane protein, at 564,620 to 564,868
_00541
ECD_00542: ECD_00542 - weak gamma-glutamyl:cysteine ligase, at 564,934 to 566,052
_00542
Position (kb) 563
564
565 Strain fitness (log2 ratio) -1
0
1 at 562.449 kb on - strand, within ECD_00538 at 562.733 kb on - strand, within ECD_00538 at 562.754 kb on - strand, within ECD_00538 at 562.754 kb on - strand, within ECD_00538 at 562.783 kb on + strand, within ECD_00538 at 562.784 kb on - strand, within ECD_00538 at 562.914 kb on - strand, within ECD_00538 at 562.970 kb on - strand, within ECD_00538 at 563.322 kb on - strand at 563.322 kb on - strand at 563.332 kb on + strand at 563.346 kb on + strand at 563.347 kb on - strand at 563.547 kb on - strand, within ECD_00539 at 563.716 kb on - strand, within ECD_00539 at 563.874 kb on + strand, within ECD_00539 at 563.874 kb on + strand, within ECD_00539 at 563.891 kb on + strand, within ECD_00539 at 563.892 kb on - strand, within ECD_00539 at 563.949 kb on + strand, within ECD_00539 at 563.988 kb on - strand, within ECD_00539 at 564.156 kb on - strand at 564.176 kb on - strand at 564.176 kb on - strand at 564.356 kb on - strand, within ECD_00540 at 564.436 kb on - strand, within ECD_00540 at 564.590 kb on + strand at 564.590 kb on + strand at 564.591 kb on - strand at 564.670 kb on - strand, within ECD_00541 at 564.868 kb on + strand at 564.884 kb on - strand at 564.935 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 562,449 - ECD_00538 0.29 -0.2 562,733 - ECD_00538 0.52 +0.6 562,754 - ECD_00538 0.54 +0.0 562,754 - ECD_00538 0.54 -0.1 562,783 + ECD_00538 0.56 +0.1 562,784 - ECD_00538 0.56 -0.0 562,914 - ECD_00538 0.66 +0.5 562,970 - ECD_00538 0.71 -0.4 563,322 - +0.0 563,322 - -0.3 563,332 + +0.9 563,346 + -0.0 563,347 - -0.4 563,547 - ECD_00539 0.16 -0.3 563,716 - ECD_00539 0.42 +0.3 563,874 + ECD_00539 0.66 -0.9 563,874 + ECD_00539 0.66 -0.1 563,891 + ECD_00539 0.69 -0.6 563,892 - ECD_00539 0.69 +0.3 563,949 + ECD_00539 0.78 +0.6 563,988 - ECD_00539 0.84 +0.9 564,156 - +0.3 564,176 - +0.2 564,176 - +0.1 564,356 - ECD_00540 0.46 +0.1 564,436 - ECD_00540 0.67 +1.0 564,590 + -0.2 564,590 + -0.9 564,591 - +0.1 564,670 - ECD_00541 0.20 +0.2 564,868 + -0.8 564,884 - -0.1 564,935 + +0.4
Or see this region's nucleotide sequence