Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00486 and ECD_00487 overlap by 145 nucleotides ECD_00487 and ECD_00488 are separated by 267 nucleotides ECD_00488 and ECD_00489 are separated by 98 nucleotides ECD_00489 and ECD_00490 overlap by 23 nucleotides ECD_00490 and ECD_00492 are separated by 86 nucleotides ECD_00492 and ECD_00493 are separated by 67 nucleotides
ECD_00486: ECD_00486 - DLP12 prophage; putative phage integrase, at 533,908 to 535,071
_00486
ECD_00487: ECD_00487 - Excisionase, at 534,927 to 535,328
_00487
ECD_00488: ECD_00488 - hypothetical protein, at 535,596 to 535,814
_00488
ECD_00489: ECD_00489 - hypothetical protein, at 535,913 to 536,227
_00489
ECD_00490: ECD_00490 - putative DNA N-6-adenine-methyltransferase of bacteriophage, at 536,205 to 536,570
_00490
ECD_00492: ECD_00492 - hypothetical protein, at 536,657 to 536,842
_00492
ECD_00493: ECD_00493 - DLP12 prophage; multidrug resistance protein, at 536,910 to 537,242
_00493
Position (kb) 535
536
537 Strain fitness (log2 ratio) -2
-1
0
1 at 535.040 kb on + strand at 535.040 kb on + strand at 535.041 kb on - strand at 535.115 kb on + strand, within ECD_00487 at 535.116 kb on - strand, within ECD_00487 at 535.193 kb on + strand, within ECD_00487 at 535.289 kb on - strand at 535.289 kb on - strand at 535.302 kb on + strand at 535.434 kb on + strand at 535.435 kb on - strand at 535.458 kb on - strand at 535.477 kb on - strand at 535.517 kb on + strand at 535.620 kb on - strand, within ECD_00488 at 535.845 kb on - strand at 535.845 kb on - strand at 536.274 kb on - strand, within ECD_00490 at 536.367 kb on - strand, within ECD_00490 at 536.455 kb on - strand, within ECD_00490 at 536.463 kb on + strand, within ECD_00490 at 536.464 kb on - strand, within ECD_00490 at 536.522 kb on + strand, within ECD_00490 at 536.530 kb on + strand, within ECD_00490 at 536.564 kb on - strand at 536.637 kb on + strand at 536.638 kb on - strand at 536.815 kb on + strand, within ECD_00492
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 535,040 + -0.8 535,040 + +0.6 535,041 - -0.7 535,115 + ECD_00487 0.47 +0.9 535,116 - ECD_00487 0.47 +0.2 535,193 + ECD_00487 0.66 -0.0 535,289 - +0.3 535,289 - +1.4 535,302 + -1.9 535,434 + -0.2 535,435 - +0.5 535,458 - -0.4 535,477 - +0.3 535,517 + +1.2 535,620 - ECD_00488 0.11 -0.7 535,845 - +0.3 535,845 - +0.5 536,274 - ECD_00490 0.19 +0.2 536,367 - ECD_00490 0.44 +0.4 536,455 - ECD_00490 0.68 +1.1 536,463 + ECD_00490 0.70 +0.0 536,464 - ECD_00490 0.71 +0.3 536,522 + ECD_00490 0.87 +0.7 536,530 + ECD_00490 0.89 -0.5 536,564 - -0.2 536,637 + -0.4 536,638 - +0.4 536,815 + ECD_00492 0.85 -1.1
Or see this region's nucleotide sequence