Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00486 and ECD_00487 overlap by 145 nucleotides ECD_00487 and ECD_00488 are separated by 267 nucleotides ECD_00488 and ECD_00489 are separated by 98 nucleotides ECD_00489 and ECD_00490 overlap by 23 nucleotides
ECD_00486: ECD_00486 - DLP12 prophage; putative phage integrase, at 533,908 to 535,071
_00486
ECD_00487: ECD_00487 - Excisionase, at 534,927 to 535,328
_00487
ECD_00488: ECD_00488 - hypothetical protein, at 535,596 to 535,814
_00488
ECD_00489: ECD_00489 - hypothetical protein, at 535,913 to 536,227
_00489
ECD_00490: ECD_00490 - putative DNA N-6-adenine-methyltransferase of bacteriophage, at 536,205 to 536,570
_00490
Position (kb) 534
535
536 Strain fitness (log2 ratio) -2
-1
0
1 at 533.949 kb on + strand at 533.961 kb on + strand at 534.026 kb on + strand, within ECD_00486 at 534.026 kb on + strand, within ECD_00486 at 534.031 kb on - strand, within ECD_00486 at 534.252 kb on + strand, within ECD_00486 at 534.253 kb on - strand, within ECD_00486 at 534.257 kb on - strand, within ECD_00486 at 534.257 kb on - strand, within ECD_00486 at 534.257 kb on - strand, within ECD_00486 at 534.257 kb on - strand, within ECD_00486 at 534.257 kb on - strand, within ECD_00486 at 534.303 kb on + strand, within ECD_00486 at 534.304 kb on - strand, within ECD_00486 at 534.304 kb on - strand, within ECD_00486 at 534.412 kb on + strand, within ECD_00486 at 534.413 kb on - strand, within ECD_00486 at 534.548 kb on - strand, within ECD_00486 at 534.613 kb on + strand, within ECD_00486 at 534.794 kb on - strand, within ECD_00486 at 535.040 kb on + strand at 535.040 kb on + strand at 535.041 kb on - strand at 535.115 kb on + strand, within ECD_00487 at 535.116 kb on - strand, within ECD_00487 at 535.193 kb on + strand, within ECD_00487 at 535.289 kb on - strand at 535.289 kb on - strand at 535.302 kb on + strand at 535.434 kb on + strand at 535.435 kb on - strand at 535.458 kb on - strand at 535.477 kb on - strand at 535.517 kb on + strand at 535.620 kb on - strand, within ECD_00488 at 535.845 kb on - strand at 535.845 kb on - strand at 536.274 kb on - strand, within ECD_00490
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 533,949 + +0.1 533,961 + -2.6 534,026 + ECD_00486 0.10 +0.3 534,026 + ECD_00486 0.10 -0.5 534,031 - ECD_00486 0.11 +0.6 534,252 + ECD_00486 0.30 +0.2 534,253 - ECD_00486 0.30 +0.9 534,257 - ECD_00486 0.30 +1.7 534,257 - ECD_00486 0.30 +0.3 534,257 - ECD_00486 0.30 +0.3 534,257 - ECD_00486 0.30 +0.2 534,257 - ECD_00486 0.30 -0.2 534,303 + ECD_00486 0.34 -0.3 534,304 - ECD_00486 0.34 -0.4 534,304 - ECD_00486 0.34 +0.5 534,412 + ECD_00486 0.43 +0.3 534,413 - ECD_00486 0.43 +0.5 534,548 - ECD_00486 0.55 +0.7 534,613 + ECD_00486 0.61 +0.9 534,794 - ECD_00486 0.76 +0.1 535,040 + -0.8 535,040 + +0.6 535,041 - -0.7 535,115 + ECD_00487 0.47 +0.9 535,116 - ECD_00487 0.47 +0.2 535,193 + ECD_00487 0.66 -0.0 535,289 - +0.3 535,289 - +1.4 535,302 + -1.9 535,434 + -0.2 535,435 - +0.5 535,458 - -0.4 535,477 - +0.3 535,517 + +1.2 535,620 - ECD_00488 0.11 -0.7 535,845 - +0.3 535,845 - +0.5 536,274 - ECD_00490 0.19 +0.2
Or see this region's nucleotide sequence