Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00435 and ECD_00436 are separated by 261 nucleotides ECD_00436 and ECD_00437 are separated by 2 nucleotides
ECD_00435: ECD_00435 - copper transporter, at 478,022 to 480,526
_00435
ECD_00436: ECD_00436 - glutaminase 1, at 480,788 to 481,720
_00436
ECD_00437: ECD_00437 - putative amino acid transporter, at 481,723 to 483,015
_00437
Position (kb) 480
481
482 Strain fitness (log2 ratio) -1
0
1 at 480.115 kb on + strand, within ECD_00435 at 480.526 kb on + strand at 480.527 kb on - strand at 480.540 kb on - strand at 480.792 kb on + strand at 480.872 kb on + strand at 480.894 kb on + strand, within ECD_00436 at 480.894 kb on + strand, within ECD_00436 at 480.895 kb on - strand, within ECD_00436 at 480.944 kb on + strand, within ECD_00436 at 480.944 kb on + strand, within ECD_00436 at 480.944 kb on + strand, within ECD_00436 at 481.098 kb on + strand, within ECD_00436 at 481.206 kb on + strand, within ECD_00436 at 481.240 kb on - strand, within ECD_00436 at 481.314 kb on - strand, within ECD_00436 at 481.331 kb on + strand, within ECD_00436 at 481.332 kb on - strand, within ECD_00436 at 481.361 kb on + strand, within ECD_00436 at 481.362 kb on - strand, within ECD_00436 at 481.390 kb on + strand, within ECD_00436 at 481.391 kb on - strand, within ECD_00436 at 481.484 kb on + strand, within ECD_00436 at 481.517 kb on + strand, within ECD_00436 at 481.700 kb on + strand at 481.701 kb on - strand at 481.702 kb on + strand at 481.711 kb on + strand at 481.712 kb on - strand at 481.740 kb on + strand at 481.740 kb on + strand at 481.844 kb on + strand at 481.913 kb on - strand, within ECD_00437 at 481.934 kb on - strand, within ECD_00437 at 482.068 kb on + strand, within ECD_00437 at 482.165 kb on + strand, within ECD_00437 at 482.271 kb on + strand, within ECD_00437 at 482.316 kb on + strand, within ECD_00437 at 482.443 kb on + strand, within ECD_00437 at 482.443 kb on + strand, within ECD_00437 at 482.443 kb on + strand, within ECD_00437 at 482.444 kb on - strand, within ECD_00437 at 482.676 kb on + strand, within ECD_00437 at 482.698 kb on - strand, within ECD_00437 at 482.698 kb on - strand, within ECD_00437
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 480,115 + ECD_00435 0.84 -0.1 480,526 + -0.2 480,527 - +1.0 480,540 - +0.1 480,792 + -0.5 480,872 + +0.5 480,894 + ECD_00436 0.11 +0.3 480,894 + ECD_00436 0.11 +0.5 480,895 - ECD_00436 0.11 -0.1 480,944 + ECD_00436 0.17 -0.7 480,944 + ECD_00436 0.17 +0.6 480,944 + ECD_00436 0.17 +0.2 481,098 + ECD_00436 0.33 +0.5 481,206 + ECD_00436 0.45 -0.3 481,240 - ECD_00436 0.48 +0.3 481,314 - ECD_00436 0.56 -0.0 481,331 + ECD_00436 0.58 -0.0 481,332 - ECD_00436 0.58 -0.5 481,361 + ECD_00436 0.61 +0.4 481,362 - ECD_00436 0.62 +0.4 481,390 + ECD_00436 0.65 +0.6 481,391 - ECD_00436 0.65 -0.1 481,484 + ECD_00436 0.75 +0.4 481,517 + ECD_00436 0.78 -0.2 481,700 + +0.0 481,701 - -0.1 481,702 + -0.1 481,711 + -0.2 481,712 - -1.1 481,740 + +1.0 481,740 + +0.6 481,844 + +0.9 481,913 - ECD_00437 0.15 +0.5 481,934 - ECD_00437 0.16 -0.2 482,068 + ECD_00437 0.27 +0.4 482,165 + ECD_00437 0.34 -0.1 482,271 + ECD_00437 0.42 +0.4 482,316 + ECD_00437 0.46 -0.2 482,443 + ECD_00437 0.56 +0.4 482,443 + ECD_00437 0.56 -0.3 482,443 + ECD_00437 0.56 +0.6 482,444 - ECD_00437 0.56 +1.3 482,676 + ECD_00437 0.74 -0.1 482,698 - ECD_00437 0.75 +0.2 482,698 - ECD_00437 0.75 -0.1
Or see this region's nucleotide sequence