Strain Fitness in Escherichia coli BL21 around ECD_00435

Experiment: Mixed culture, Halobacteriovorax-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00433 and ECD_00434 are separated by 137 nucleotidesECD_00434 and ECD_00435 are separated by 416 nucleotidesECD_00435 and ECD_00436 are separated by 261 nucleotides ECD_00433: ECD_00433 - TraB family protein, at 476,332 to 477,126 _00433 ECD_00434: ECD_00434 - putative DNA-binding transcriptional regulator, at 477,264 to 477,605 _00434 ECD_00435: ECD_00435 - copper transporter, at 478,022 to 480,526 _00435 ECD_00436: ECD_00436 - glutaminase 1, at 480,788 to 481,720 _00436 Position (kb) 478 479 480 481Strain fitness (log2 ratio) -1 0 1at 477.051 kb on + strandat 477.127 kb on - strandat 477.146 kb on + strandat 477.146 kb on + strandat 477.147 kb on - strandat 477.199 kb on - strandat 477.209 kb on + strandat 477.257 kb on - strandat 477.455 kb on + strand, within ECD_00434at 477.692 kb on - strandat 477.701 kb on - strandat 477.709 kb on + strandat 477.950 kb on + strandat 478.019 kb on + strandat 478.020 kb on - strandat 478.020 kb on - strandat 478.024 kb on - strandat 478.106 kb on + strandat 478.176 kb on + strandat 478.177 kb on - strandat 478.180 kb on + strandat 478.181 kb on - strandat 478.684 kb on + strand, within ECD_00435at 478.703 kb on + strand, within ECD_00435at 478.728 kb on - strand, within ECD_00435at 478.804 kb on + strand, within ECD_00435at 478.967 kb on + strand, within ECD_00435at 478.968 kb on - strand, within ECD_00435at 478.968 kb on - strand, within ECD_00435at 478.981 kb on + strand, within ECD_00435at 479.099 kb on - strand, within ECD_00435at 479.131 kb on - strand, within ECD_00435at 479.131 kb on - strand, within ECD_00435at 479.188 kb on + strand, within ECD_00435at 479.211 kb on - strand, within ECD_00435at 479.296 kb on + strand, within ECD_00435at 479.296 kb on + strand, within ECD_00435at 479.296 kb on + strand, within ECD_00435at 479.297 kb on - strand, within ECD_00435at 479.297 kb on - strand, within ECD_00435at 479.297 kb on - strand, within ECD_00435at 479.300 kb on - strand, within ECD_00435at 479.300 kb on - strand, within ECD_00435at 479.300 kb on - strand, within ECD_00435at 479.345 kb on + strand, within ECD_00435at 479.346 kb on - strand, within ECD_00435at 479.494 kb on + strand, within ECD_00435at 479.494 kb on + strand, within ECD_00435at 479.495 kb on - strand, within ECD_00435at 479.495 kb on - strand, within ECD_00435at 479.495 kb on - strand, within ECD_00435at 480.115 kb on + strand, within ECD_00435at 480.526 kb on + strandat 480.527 kb on - strandat 480.540 kb on - strandat 480.792 kb on + strandat 480.872 kb on + strandat 480.894 kb on + strand, within ECD_00436at 480.894 kb on + strand, within ECD_00436at 480.895 kb on - strand, within ECD_00436at 480.944 kb on + strand, within ECD_00436at 480.944 kb on + strand, within ECD_00436at 480.944 kb on + strand, within ECD_00436at 481.098 kb on + strand, within ECD_00436at 481.206 kb on + strand, within ECD_00436at 481.240 kb on - strand, within ECD_00436at 481.314 kb on - strand, within ECD_00436at 481.331 kb on + strand, within ECD_00436at 481.332 kb on - strand, within ECD_00436at 481.361 kb on + strand, within ECD_00436at 481.362 kb on - strand, within ECD_00436at 481.390 kb on + strand, within ECD_00436at 481.391 kb on - strand, within ECD_00436at 481.484 kb on + strand, within ECD_00436at 481.517 kb on + strand, within ECD_00436

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1
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477,051 + -0.2
477,127 - -1.4
477,146 + +0.6
477,146 + +0.5
477,147 - +0.1
477,199 - +0.3
477,209 + +0.4
477,257 - +1.3
477,455 + ECD_00434 0.56 -0.7
477,692 - -1.2
477,701 - -0.4
477,709 + +0.3
477,950 + -0.2
478,019 + -0.4
478,020 - +0.3
478,020 - +0.6
478,024 - -1.2
478,106 + -0.3
478,176 + +0.0
478,177 - -0.2
478,180 + +1.3
478,181 - +0.4
478,684 + ECD_00435 0.26 -0.2
478,703 + ECD_00435 0.27 +0.2
478,728 - ECD_00435 0.28 -0.1
478,804 + ECD_00435 0.31 -0.9
478,967 + ECD_00435 0.38 -0.5
478,968 - ECD_00435 0.38 -0.3
478,968 - ECD_00435 0.38 +0.2
478,981 + ECD_00435 0.38 +0.4
479,099 - ECD_00435 0.43 +0.7
479,131 - ECD_00435 0.44 +0.0
479,131 - ECD_00435 0.44 +0.3
479,188 + ECD_00435 0.47 +0.4
479,211 - ECD_00435 0.47 +0.1
479,296 + ECD_00435 0.51 +1.0
479,296 + ECD_00435 0.51 -0.8
479,296 + ECD_00435 0.51 -0.7
479,297 - ECD_00435 0.51 -0.2
479,297 - ECD_00435 0.51 +0.3
479,297 - ECD_00435 0.51 +0.3
479,300 - ECD_00435 0.51 +0.4
479,300 - ECD_00435 0.51 -0.8
479,300 - ECD_00435 0.51 +0.0
479,345 + ECD_00435 0.53 -0.4
479,346 - ECD_00435 0.53 -1.4
479,494 + ECD_00435 0.59 +1.0
479,494 + ECD_00435 0.59 -0.6
479,495 - ECD_00435 0.59 +0.3
479,495 - ECD_00435 0.59 +0.4
479,495 - ECD_00435 0.59 -0.2
480,115 + ECD_00435 0.84 -0.1
480,526 + -0.2
480,527 - +1.0
480,540 - +0.1
480,792 + -0.5
480,872 + +0.5
480,894 + ECD_00436 0.11 +0.3
480,894 + ECD_00436 0.11 +0.5
480,895 - ECD_00436 0.11 -0.1
480,944 + ECD_00436 0.17 -0.7
480,944 + ECD_00436 0.17 +0.6
480,944 + ECD_00436 0.17 +0.2
481,098 + ECD_00436 0.33 +0.5
481,206 + ECD_00436 0.45 -0.3
481,240 - ECD_00436 0.48 +0.3
481,314 - ECD_00436 0.56 -0.0
481,331 + ECD_00436 0.58 -0.0
481,332 - ECD_00436 0.58 -0.5
481,361 + ECD_00436 0.61 +0.4
481,362 - ECD_00436 0.62 +0.4
481,390 + ECD_00436 0.65 +0.6
481,391 - ECD_00436 0.65 -0.1
481,484 + ECD_00436 0.75 +0.4
481,517 + ECD_00436 0.78 -0.2

Or see this region's nucleotide sequence