Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00433 and ECD_00434 are separated by 137 nucleotides ECD_00434 and ECD_00435 are separated by 416 nucleotides
ECD_00433: ECD_00433 - TraB family protein, at 476,332 to 477,126
_00433
ECD_00434: ECD_00434 - putative DNA-binding transcriptional regulator, at 477,264 to 477,605
_00434
ECD_00435: ECD_00435 - copper transporter, at 478,022 to 480,526
_00435
Position (kb) 477
478 Strain fitness (log2 ratio) -1
0
1 at 476.275 kb on - strand at 476.275 kb on - strand at 476.375 kb on - strand at 476.375 kb on - strand at 476.375 kb on - strand at 476.375 kb on - strand at 476.396 kb on + strand at 476.396 kb on + strand at 476.397 kb on - strand at 476.465 kb on + strand, within ECD_00433 at 476.485 kb on - strand, within ECD_00433 at 476.497 kb on + strand, within ECD_00433 at 476.497 kb on + strand, within ECD_00433 at 476.498 kb on - strand, within ECD_00433 at 476.498 kb on - strand, within ECD_00433 at 476.498 kb on - strand, within ECD_00433 at 476.498 kb on - strand, within ECD_00433 at 476.499 kb on + strand, within ECD_00433 at 476.499 kb on + strand, within ECD_00433 at 476.500 kb on - strand, within ECD_00433 at 476.500 kb on - strand, within ECD_00433 at 476.506 kb on - strand, within ECD_00433 at 476.670 kb on + strand, within ECD_00433 at 476.671 kb on - strand, within ECD_00433 at 476.893 kb on - strand, within ECD_00433 at 477.003 kb on + strand, within ECD_00433 at 477.051 kb on + strand at 477.127 kb on - strand at 477.146 kb on + strand at 477.146 kb on + strand at 477.147 kb on - strand at 477.199 kb on - strand at 477.209 kb on + strand at 477.257 kb on - strand at 477.455 kb on + strand, within ECD_00434 at 477.692 kb on - strand at 477.701 kb on - strand at 477.709 kb on + strand at 477.950 kb on + strand at 478.019 kb on + strand at 478.020 kb on - strand at 478.020 kb on - strand at 478.024 kb on - strand at 478.106 kb on + strand at 478.176 kb on + strand at 478.177 kb on - strand at 478.180 kb on + strand at 478.181 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 476,275 - +0.3 476,275 - -0.0 476,375 - +0.8 476,375 - -0.3 476,375 - +0.7 476,375 - -0.5 476,396 + -0.5 476,396 + +0.2 476,397 - +0.5 476,465 + ECD_00433 0.17 -1.1 476,485 - ECD_00433 0.19 +0.1 476,497 + ECD_00433 0.21 -0.1 476,497 + ECD_00433 0.21 +1.1 476,498 - ECD_00433 0.21 -0.2 476,498 - ECD_00433 0.21 -0.4 476,498 - ECD_00433 0.21 +0.3 476,498 - ECD_00433 0.21 +0.1 476,499 + ECD_00433 0.21 +0.1 476,499 + ECD_00433 0.21 -1.3 476,500 - ECD_00433 0.21 -0.3 476,500 - ECD_00433 0.21 +0.3 476,506 - ECD_00433 0.22 -0.2 476,670 + ECD_00433 0.43 -0.2 476,671 - ECD_00433 0.43 +0.4 476,893 - ECD_00433 0.71 +0.6 477,003 + ECD_00433 0.84 +0.4 477,051 + -0.2 477,127 - -1.4 477,146 + +0.6 477,146 + +0.5 477,147 - +0.1 477,199 - +0.3 477,209 + +0.4 477,257 - +1.3 477,455 + ECD_00434 0.56 -0.7 477,692 - -1.2 477,701 - -0.4 477,709 + +0.3 477,950 + -0.2 478,019 + -0.4 478,020 - +0.3 478,020 - +0.6 478,024 - -1.2 478,106 + -0.3 478,176 + +0.0 478,177 - -0.2 478,180 + +1.3 478,181 - +0.4
Or see this region's nucleotide sequence