Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00404 and ECD_00405 are separated by 217 nucleotides ECD_00405 and ECD_00406 are separated by 30 nucleotides ECD_00406 and ECD_00407 are separated by 300 nucleotides ECD_00407 and ECD_00408 are separated by 41 nucleotides
ECD_00404: ECD_00404 - acyl-CoA thioesterase 2, at 443,347 to 444,207
_00404
ECD_00405: ECD_00405 - outer membrane lipoprotein, at 444,425 to 444,997
_00405
ECD_00406: ECD_00406 - excision repair protein, alkyltransferase-like protein ATL, at 445,028 to 445,417
_00406
ECD_00407: ECD_00407 - DUF1428 family protein, at 445,718 to 446,071
_00407
ECD_00408: ECD_00408 - putative membrane-anchored cyclic-di-GMP phosphodiesterase, at 446,113 to 447,663
_00408
Position (kb) 445
446 Strain fitness (log2 ratio) -1
0
1 at 444.037 kb on + strand, within ECD_00404 at 444.075 kb on - strand, within ECD_00404 at 444.116 kb on - strand, within ECD_00404 at 444.173 kb on - strand at 444.207 kb on + strand at 444.207 kb on + strand at 444.208 kb on - strand at 444.210 kb on - strand at 444.256 kb on + strand at 444.257 kb on - strand at 444.292 kb on + strand at 444.314 kb on - strand at 444.357 kb on + strand at 444.488 kb on - strand, within ECD_00405 at 444.556 kb on + strand, within ECD_00405 at 444.811 kb on - strand, within ECD_00405 at 444.815 kb on - strand, within ECD_00405 at 445.029 kb on + strand at 445.032 kb on + strand at 445.033 kb on - strand at 445.119 kb on - strand, within ECD_00406 at 445.264 kb on - strand, within ECD_00406 at 445.276 kb on - strand, within ECD_00406 at 445.289 kb on - strand, within ECD_00406 at 445.368 kb on + strand, within ECD_00406 at 445.697 kb on + strand at 445.698 kb on - strand at 445.710 kb on + strand at 445.710 kb on + strand at 445.711 kb on - strand at 445.711 kb on - strand at 445.724 kb on + strand at 445.724 kb on + strand at 445.725 kb on - strand at 445.725 kb on - strand at 445.828 kb on + strand, within ECD_00407 at 445.855 kb on - strand, within ECD_00407 at 446.069 kb on + strand at 446.069 kb on + strand at 446.186 kb on + strand at 446.187 kb on - strand at 446.283 kb on + strand, within ECD_00408 at 446.304 kb on - strand, within ECD_00408 at 446.405 kb on + strand, within ECD_00408
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 444,037 + ECD_00404 0.80 +0.3 444,075 - ECD_00404 0.85 +0.3 444,116 - ECD_00404 0.89 -0.0 444,173 - +0.4 444,207 + -0.7 444,207 + +0.1 444,208 - +0.5 444,210 - -0.6 444,256 + +0.4 444,257 - -0.6 444,292 + +0.5 444,314 - -0.4 444,357 + +0.3 444,488 - ECD_00405 0.11 -0.4 444,556 + ECD_00405 0.23 -0.7 444,811 - ECD_00405 0.67 +0.3 444,815 - ECD_00405 0.68 -0.3 445,029 + -0.1 445,032 + -0.5 445,033 - +0.2 445,119 - ECD_00406 0.23 +0.3 445,264 - ECD_00406 0.61 +0.9 445,276 - ECD_00406 0.64 +1.3 445,289 - ECD_00406 0.67 +0.1 445,368 + ECD_00406 0.87 +0.5 445,697 + -0.3 445,698 - -0.2 445,710 + +0.9 445,710 + +1.0 445,711 - -1.1 445,711 - +0.0 445,724 + +0.0 445,724 + -0.4 445,725 - -0.1 445,725 - +1.4 445,828 + ECD_00407 0.31 -0.3 445,855 - ECD_00407 0.39 +1.1 446,069 + +0.4 446,069 + -1.4 446,186 + +0.5 446,187 - -0.4 446,283 + ECD_00408 0.11 +0.2 446,304 - ECD_00408 0.12 +1.6 446,405 + ECD_00408 0.19 -0.4
Or see this region's nucleotide sequence