Strain Fitness in Escherichia coli BL21 around ECD_00385

Experiment: Mixed culture, Halobacteriovorax-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00384 and ECD_00385 are separated by 43 nucleotidesECD_00385 and ECD_00386 are separated by 304 nucleotidesECD_00386 and ECD_00387 are separated by 343 nucleotides ECD_00384: ECD_00384 - muropeptide transporter, at 419,754 to 421,229 _00384 ECD_00385: ECD_00385 - putative lipoprotein, at 421,273 to 421,851 _00385 ECD_00386: ECD_00386 - stationary-phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC, at 422,156 to 422,473 _00386 ECD_00387: ECD_00387 - peptidyl-prolyl cis/trans isomerase (trigger factor), at 422,817 to 424,115 _00387 Position (kb) 421 422Strain fitness (log2 ratio) -1 0 1at 420.281 kb on - strand, within ECD_00384at 420.398 kb on - strand, within ECD_00384at 420.527 kb on + strand, within ECD_00384at 420.529 kb on + strand, within ECD_00384at 420.539 kb on + strand, within ECD_00384at 420.539 kb on + strand, within ECD_00384at 420.668 kb on + strand, within ECD_00384at 420.700 kb on + strand, within ECD_00384at 420.725 kb on + strand, within ECD_00384at 420.955 kb on - strand, within ECD_00384at 420.955 kb on - strand, within ECD_00384at 420.958 kb on - strand, within ECD_00384at 421.016 kb on - strand, within ECD_00384at 421.055 kb on - strand, within ECD_00384at 421.100 kb on + strandat 421.125 kb on + strandat 421.125 kb on + strandat 421.126 kb on - strandat 421.238 kb on - strandat 421.324 kb on - strandat 421.324 kb on - strandat 421.324 kb on - strandat 421.407 kb on - strand, within ECD_00385at 421.491 kb on - strand, within ECD_00385at 421.521 kb on - strand, within ECD_00385at 421.521 kb on - strand, within ECD_00385at 421.575 kb on - strand, within ECD_00385at 421.575 kb on - strand, within ECD_00385at 421.717 kb on + strand, within ECD_00385at 421.758 kb on + strand, within ECD_00385at 421.813 kb on - strandat 421.813 kb on - strandat 421.813 kb on - strandat 421.873 kb on + strandat 421.874 kb on - strandat 421.874 kb on - strandat 421.942 kb on + strandat 422.032 kb on + strandat 422.066 kb on + strandat 422.066 kb on + strandat 422.067 kb on - strandat 422.076 kb on + strandat 422.175 kb on + strandat 422.220 kb on + strand, within ECD_00386at 422.365 kb on + strand, within ECD_00386at 422.366 kb on - strand, within ECD_00386at 422.390 kb on - strand, within ECD_00386at 422.390 kb on - strand, within ECD_00386at 422.390 kb on - strand, within ECD_00386at 422.393 kb on + strand, within ECD_00386at 422.393 kb on + strand, within ECD_00386at 422.394 kb on - strand, within ECD_00386at 422.394 kb on - strand, within ECD_00386at 422.394 kb on - strand, within ECD_00386at 422.394 kb on - strand, within ECD_00386at 422.398 kb on + strand, within ECD_00386at 422.399 kb on - strand, within ECD_00386at 422.399 kb on - strand, within ECD_00386at 422.666 kb on + strandat 422.730 kb on - strandat 422.731 kb on + strandat 422.810 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1
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420,281 - ECD_00384 0.36 +0.6
420,398 - ECD_00384 0.44 +0.3
420,527 + ECD_00384 0.52 -0.7
420,529 + ECD_00384 0.53 -0.1
420,539 + ECD_00384 0.53 +0.2
420,539 + ECD_00384 0.53 -0.5
420,668 + ECD_00384 0.62 -1.4
420,700 + ECD_00384 0.64 -0.6
420,725 + ECD_00384 0.66 +0.2
420,955 - ECD_00384 0.81 -0.3
420,955 - ECD_00384 0.81 +0.2
420,958 - ECD_00384 0.82 -0.1
421,016 - ECD_00384 0.86 -0.5
421,055 - ECD_00384 0.88 -0.6
421,100 + +0.0
421,125 + +0.1
421,125 + +0.2
421,126 - -0.3
421,238 - +0.3
421,324 - -1.4
421,324 - -0.6
421,324 - -0.9
421,407 - ECD_00385 0.23 -1.4
421,491 - ECD_00385 0.38 -0.1
421,521 - ECD_00385 0.43 -0.1
421,521 - ECD_00385 0.43 -0.1
421,575 - ECD_00385 0.52 -0.6
421,575 - ECD_00385 0.52 -0.4
421,717 + ECD_00385 0.77 -0.9
421,758 + ECD_00385 0.84 -1.1
421,813 - -1.3
421,813 - -1.0
421,813 - -0.2
421,873 + -0.7
421,874 - -0.6
421,874 - -0.6
421,942 + +0.0
422,032 + +0.2
422,066 + -0.7
422,066 + -0.7
422,067 - +0.1
422,076 + +0.3
422,175 + -0.3
422,220 + ECD_00386 0.20 -0.0
422,365 + ECD_00386 0.66 +0.0
422,366 - ECD_00386 0.66 +1.1
422,390 - ECD_00386 0.74 +1.6
422,390 - ECD_00386 0.74 +0.4
422,390 - ECD_00386 0.74 -0.5
422,393 + ECD_00386 0.75 -0.2
422,393 + ECD_00386 0.75 -0.1
422,394 - ECD_00386 0.75 -1.0
422,394 - ECD_00386 0.75 +1.0
422,394 - ECD_00386 0.75 -0.6
422,394 - ECD_00386 0.75 -1.3
422,398 + ECD_00386 0.76 +0.0
422,399 - ECD_00386 0.76 -1.1
422,399 - ECD_00386 0.76 +0.1
422,666 + -0.4
422,730 - +1.5
422,731 + -0.3
422,810 + -0.4

Or see this region's nucleotide sequence