Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00382 and ECD_00383 are separated by 21 nucleotides ECD_00383 and ECD_00384 are separated by 461 nucleotides
ECD_00382: ECD_00382 - cytochrome o ubiquinol oxidase subunit I, at 416,332 to 418,323
_00382
ECD_00383: ECD_00383 - cytochrome o ubiquinol oxidase subunit II, at 418,345 to 419,292
_00383
ECD_00384: ECD_00384 - muropeptide transporter, at 419,754 to 421,229
_00384
Position (kb) 418
419
420 Strain fitness (log2 ratio) -1
0
1 at 417.358 kb on - strand, within ECD_00382 at 417.384 kb on + strand, within ECD_00382 at 417.500 kb on + strand, within ECD_00382 at 417.500 kb on + strand, within ECD_00382 at 417.501 kb on - strand, within ECD_00382 at 417.501 kb on - strand, within ECD_00382 at 417.501 kb on - strand, within ECD_00382 at 417.501 kb on - strand, within ECD_00382 at 417.501 kb on - strand, within ECD_00382 at 417.501 kb on - strand, within ECD_00382 at 417.501 kb on - strand, within ECD_00382 at 417.501 kb on - strand, within ECD_00382 at 417.552 kb on - strand, within ECD_00382 at 417.606 kb on + strand, within ECD_00382 at 417.614 kb on - strand, within ECD_00382 at 417.728 kb on - strand, within ECD_00382 at 417.728 kb on - strand, within ECD_00382 at 417.730 kb on - strand, within ECD_00382 at 417.782 kb on + strand, within ECD_00382 at 417.783 kb on - strand, within ECD_00382 at 417.783 kb on - strand, within ECD_00382 at 417.783 kb on - strand, within ECD_00382 at 417.880 kb on - strand, within ECD_00382 at 417.893 kb on - strand, within ECD_00382 at 417.997 kb on - strand, within ECD_00382 at 417.997 kb on - strand, within ECD_00382 at 418.028 kb on + strand, within ECD_00382 at 418.140 kb on + strand at 418.140 kb on + strand at 418.140 kb on + strand at 418.141 kb on - strand at 418.141 kb on - strand at 418.141 kb on - strand at 418.141 kb on - strand at 418.141 kb on - strand at 418.141 kb on - strand at 418.142 kb on + strand at 418.142 kb on + strand at 418.142 kb on + strand at 418.143 kb on - strand at 418.143 kb on - strand at 418.143 kb on - strand at 418.143 kb on - strand at 418.143 kb on - strand at 418.143 kb on - strand at 418.143 kb on - strand at 418.143 kb on - strand at 418.143 kb on - strand at 418.143 kb on - strand at 418.162 kb on - strand at 418.196 kb on + strand at 418.197 kb on - strand at 418.197 kb on - strand at 418.214 kb on + strand at 418.214 kb on + strand at 418.279 kb on - strand at 418.279 kb on - strand at 418.327 kb on + strand at 418.450 kb on - strand, within ECD_00383 at 418.499 kb on + strand, within ECD_00383 at 418.514 kb on + strand, within ECD_00383 at 418.515 kb on - strand, within ECD_00383 at 418.626 kb on + strand, within ECD_00383 at 418.626 kb on + strand, within ECD_00383 at 418.627 kb on - strand, within ECD_00383 at 418.627 kb on - strand, within ECD_00383 at 418.677 kb on + strand, within ECD_00383 at 418.686 kb on - strand, within ECD_00383 at 418.686 kb on - strand, within ECD_00383 at 418.686 kb on - strand, within ECD_00383 at 418.686 kb on - strand, within ECD_00383 at 418.686 kb on - strand, within ECD_00383 at 419.000 kb on - strand, within ECD_00383 at 419.000 kb on - strand, within ECD_00383 at 419.004 kb on + strand, within ECD_00383 at 419.005 kb on - strand, within ECD_00383 at 419.005 kb on - strand, within ECD_00383 at 419.005 kb on - strand, within ECD_00383 at 419.009 kb on - strand, within ECD_00383 at 419.060 kb on + strand, within ECD_00383 at 419.061 kb on - strand, within ECD_00383 at 419.061 kb on - strand, within ECD_00383 at 419.064 kb on + strand, within ECD_00383 at 419.064 kb on + strand, within ECD_00383 at 419.064 kb on + strand, within ECD_00383 at 419.065 kb on - strand, within ECD_00383 at 419.204 kb on - strand at 419.234 kb on - strand at 419.234 kb on - strand at 419.249 kb on - strand at 419.358 kb on - strand at 419.362 kb on + strand at 419.415 kb on - strand at 419.415 kb on - strand at 419.428 kb on + strand at 419.429 kb on - strand at 419.827 kb on - strand at 419.902 kb on - strand, within ECD_00384 at 420.005 kb on + strand, within ECD_00384 at 420.008 kb on - strand, within ECD_00384 at 420.072 kb on + strand, within ECD_00384 at 420.076 kb on + strand, within ECD_00384 at 420.076 kb on + strand, within ECD_00384 at 420.077 kb on - strand, within ECD_00384 at 420.131 kb on - strand, within ECD_00384 at 420.142 kb on - strand, within ECD_00384 at 420.191 kb on + strand, within ECD_00384 at 420.192 kb on - strand, within ECD_00384 at 420.195 kb on - strand, within ECD_00384 at 420.195 kb on - strand, within ECD_00384 at 420.281 kb on - strand, within ECD_00384
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 417,358 - ECD_00382 0.52 -0.3 417,384 + ECD_00382 0.53 +0.1 417,500 + ECD_00382 0.59 +0.4 417,500 + ECD_00382 0.59 +0.3 417,501 - ECD_00382 0.59 -0.1 417,501 - ECD_00382 0.59 +0.7 417,501 - ECD_00382 0.59 +0.5 417,501 - ECD_00382 0.59 -0.3 417,501 - ECD_00382 0.59 +0.9 417,501 - ECD_00382 0.59 -0.0 417,501 - ECD_00382 0.59 +0.0 417,501 - ECD_00382 0.59 +0.3 417,552 - ECD_00382 0.61 +0.5 417,606 + ECD_00382 0.64 -0.1 417,614 - ECD_00382 0.64 -0.0 417,728 - ECD_00382 0.70 +0.6 417,728 - ECD_00382 0.70 -0.2 417,730 - ECD_00382 0.70 -0.0 417,782 + ECD_00382 0.73 -0.2 417,783 - ECD_00382 0.73 +0.0 417,783 - ECD_00382 0.73 +0.5 417,783 - ECD_00382 0.73 -0.6 417,880 - ECD_00382 0.78 +0.2 417,893 - ECD_00382 0.78 +0.0 417,997 - ECD_00382 0.84 +0.2 417,997 - ECD_00382 0.84 +0.3 418,028 + ECD_00382 0.85 -0.4 418,140 + -0.1 418,140 + +0.2 418,140 + -0.8 418,141 - -0.3 418,141 - -0.4 418,141 - +0.3 418,141 - -0.7 418,141 - -0.9 418,141 - -1.0 418,142 + +0.1 418,142 + -0.0 418,142 + +0.5 418,143 - -0.1 418,143 - +0.3 418,143 - +0.1 418,143 - -0.1 418,143 - +0.3 418,143 - +0.2 418,143 - +0.4 418,143 - -0.1 418,143 - +0.4 418,143 - -0.4 418,162 - -0.7 418,196 + +0.4 418,197 - -0.5 418,197 - +0.6 418,214 + +0.6 418,214 + -0.5 418,279 - +0.3 418,279 - -0.3 418,327 + -0.1 418,450 - ECD_00383 0.11 -0.6 418,499 + ECD_00383 0.16 -0.6 418,514 + ECD_00383 0.18 -0.5 418,515 - ECD_00383 0.18 -0.0 418,626 + ECD_00383 0.30 -0.2 418,626 + ECD_00383 0.30 -0.3 418,627 - ECD_00383 0.30 -0.0 418,627 - ECD_00383 0.30 -0.3 418,677 + ECD_00383 0.35 -0.8 418,686 - ECD_00383 0.36 +0.6 418,686 - ECD_00383 0.36 -0.3 418,686 - ECD_00383 0.36 -0.0 418,686 - ECD_00383 0.36 -0.2 418,686 - ECD_00383 0.36 +0.3 419,000 - ECD_00383 0.69 +0.9 419,000 - ECD_00383 0.69 -0.8 419,004 + ECD_00383 0.70 +0.1 419,005 - ECD_00383 0.70 -0.1 419,005 - ECD_00383 0.70 -0.5 419,005 - ECD_00383 0.70 -0.2 419,009 - ECD_00383 0.70 -0.5 419,060 + ECD_00383 0.75 +0.6 419,061 - ECD_00383 0.76 +0.1 419,061 - ECD_00383 0.76 -1.2 419,064 + ECD_00383 0.76 +0.4 419,064 + ECD_00383 0.76 -0.6 419,064 + ECD_00383 0.76 +0.4 419,065 - ECD_00383 0.76 -1.3 419,204 - -1.0 419,234 - +0.1 419,234 - +0.3 419,249 - -0.1 419,358 - +0.0 419,362 + +0.1 419,415 - -0.1 419,415 - -0.8 419,428 + -0.0 419,429 - +0.5 419,827 - +0.2 419,902 - ECD_00384 0.10 -0.7 420,005 + ECD_00384 0.17 +1.3 420,008 - ECD_00384 0.17 +0.7 420,072 + ECD_00384 0.22 -0.2 420,076 + ECD_00384 0.22 +0.1 420,076 + ECD_00384 0.22 +0.9 420,077 - ECD_00384 0.22 +0.1 420,131 - ECD_00384 0.26 -0.2 420,142 - ECD_00384 0.26 -0.5 420,191 + ECD_00384 0.30 +0.1 420,192 - ECD_00384 0.30 -0.3 420,195 - ECD_00384 0.30 +0.2 420,195 - ECD_00384 0.30 -0.2 420,281 - ECD_00384 0.36 +0.6
Or see this region's nucleotide sequence